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Effect of supplementation of M9 0.4% glucose with root exudates of either tomato or maize on gene expression in WT Pseudomonas donghuensis P482

ABSTRACT: Effect of supplementation of M9 0.4% glucose with root exudates of either tomato or maize on gene expression in WT Pseudomonas donghuensis P482

PROVIDER: PRJNA868728 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR21016606_1.fastq.gz	Fastqsanger.gz
	SRR21016606_2.fastq.gz	Fastqsanger.gz
	SRR21016607_1.fastq.gz	Fastqsanger.gz
	SRR21016607_2.fastq.gz	Fastqsanger.gz
	SRR21016608_1.fastq.gz	Fastqsanger.gz

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Effect of supplementation of M9 0.4% glucose with root exudates of either tomato or maize on gene expression in WT Pseudomonas donghuensis P482

Project description:To investigate and compare the influence of root exudates of tomato and maize on Pseudomonas donghuensis P482, we have grown the strain up to a stationary phase in M9 0.4% glucose medium supplemented with maize exudates (Maize), tomato exudates (Tomato) or without supplementation (Control). We then performed differential gene expression analysis, identifying changes in transcriptome profiles between each treatment (Tomato, Maize) and the Control as reference conditions, and between the two treatments.

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Host-adaptive traits in the plant-colonizing Pseudomonas donghuensis P482 revealed by transcriptomic responses to exudates of tomato and maize.

Project description:Pseudomonads are metabolically flexible and can thrive on different plant hosts. However, the metabolic adaptations required for host promiscuity are unknown. Here, we addressed this knowledge gap by employing RNAseq and comparing transcriptomic responses of Pseudomonas donghuensis P482 to root exudates of two plant hosts: tomato and maize. Our main goal was to identify the differences and the common points between these two responses. Pathways upregulated only by tomato exudates included nitric oxide detoxification, repair of iron-sulfur clusters, respiration through the cyanide-insensitive cytochrome bd, and catabolism of amino and/or fatty acids. The first two indicate the presence of NO donors in the exudates of the test plants. Maize specifically induced the activity of MexE RND-type efflux pump and copper tolerance. Genes associated with motility were induced by maize but repressed by tomato. The shared response to exudates seemed to be affected both by compounds originating from the plants and those from their growth environment: arsenic resistance and bacterioferritin synthesis were upregulated, while sulfur assimilation, sensing of ferric citrate and/or other iron carriers, heme acquisition, and transport of polar amino acids were downregulated. Our results provide directions to explore mechanisms of host adaptation in plant-associated microorganisms.

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