Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Daqu microbiota Genome sequencing and assembly

PROVIDER: PRJNA869206 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR21119100_1.fastq.gz	Fastqsanger.gz
	SRR21119100_2.fastq.gz	Fastqsanger.gz
	SRR21119101_1.fastq.gz	Fastqsanger.gz
	SRR21119101_2.fastq.gz	Fastqsanger.gz
	SRR21119102_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 96

Similar Datasets

Project description:Daqu microbiota

| PRJNA870645 | ENA

A multicenter translational biomarker phase II trial of regorafenib in patients with non-resectable pretreated colorectal cancer.

Project description:Primary objectives: The primary objective is to investigate circulating tumor DNA (ctDNA) via deep sequencing for mutation detection and by whole genome sequencing for copy number analyses before start (baseline) with regorafenib and at defined time points during administration of regorafenib for treatment efficacy in colorectal cancer patients in terms of overall survival (OS). Primary endpoints: circulating tumor DNA (ctDNA) via deep sequencing for mutation detection and by whole genome sequencing for copy number analyses before start (baseline) with regorafenib and at defined time points during administration of regorafenib for treatment efficacy in colorectal cancer patients in terms of overall survival (OS).

| 2533916 | ecrin-mdr-crc

Daqu

Project description:Daqu microbial genome sequencing and assembly

| PRJNA766542 | ENA

Proteomic sequencing data for medium-temperature and high-temperature daqu starters

Project description:Proteomic sequencing data for medium-temperature and high-temperature daqu starters

2022-07-11 | PXD035214 |

Dysfunction of histone demethylase IBM1 in Arabidopsis causes autoimmunity and reshapes the root microbiome

Project description:Root microbiota is important for plant growth and fitness. Little is known about whether and how the assembly of root microbiota may be controlled by epigenetic regulation, which is crucial for gene transcription and genome stability. Here we show that dysfunction of the histone demethylase IBM1 (INCREASE IN BONSAI METHYLATION 1) in Arabidopsis thaliana substantially reshaped the root microbiota, with the majority of the significant amplicon sequence variants (ASVs) being decreased. Transcriptome analyses of plants grown in soil and in sterile growth-medium jointly disclosed salicylic acid (SA)-mediated autoimmunity and production of the defense metabolite camalexin in the ibm1 mutants. Analyses of genome-wide histone modifications and DNA methylation highlighted epigenetic modifications permissive for transcription at several important defense regulators. Consistently, ibm1 mutants showed increased resistance to the pathogen Pseudomonas syringae DC3000 with stronger immune responses. In addition, ibm1 showed substantially impaired plant growth-promotion in response to beneficial bacteria; the impairment was partially mimicked by exogenous application of SA to wild type plants, and by a null mutation of AGP19 that is important for cell expansion and that is repressed with DNA hyper methylation in ibm1. IBM1-dependent epigenetic regulation imposes strong and broad impacts on plant-microbe interactions and thereby shapes the assembly of root microbiota.

2022-07-28 | GSE173239 | GEO

Gut microbiota regulates tumor via circRNA/miRNA networks IV

Project description:Increasing evidence indicates that gut microbiota plays an important role in cancer progression. We have employed RNA-seq or microarray for genome including mRNA, microRNA or circRNA profiling in an gut microbiota -dependent manner, as a discovery platform to identify target genes with the potential to involve in tumor regulation. The deep sequencing analysis reveals regulatory functions of microbiota-mediated circular RNA (circRNA)/microRNA networks that may contribute to cancer progression.

2020-10-13 | GSE140886 | GEO

Gut microbiota regulates tumor via circRNA/miRNA networks II

2020-10-13 | GSE140339 | GEO

Gut microbiota regulates tumor via circRNA/miRNA networks I

2020-10-13 | GSE140338 | GEO

Metaproteomics of Daqu Samples

Project description:Our study focused on MT-Daqu obtained from the Daqu fermentation room of Anhui Gujing Distillery Co., Ltd (Bozhou, Anhui, China). we have elected to perform metaproteomics sequencing on samples collected at day 2 (short-term response), day 6 (mid-term transition), and day 12 (long-term adaptation)

2025-01-11 | PXD059703 |

Daqu

Project description:Daqu Metagenomic assembly

| PRJNA884532 | ENA