Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Naphthalene Dioxygenase Gene

PROVIDER: PRJNA869211 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR21068178_1.fastq.gz	Fastqsanger.gz
	SRR21068178_2.fastq.gz	Fastqsanger.gz
	SRR21068179_1.fastq.gz	Fastqsanger.gz
	SRR21068179_2.fastq.gz	Fastqsanger.gz
	SRR21068180_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 18

Similar Datasets

NaphS2 Gene Expression During Anaerobic Degradation of Naphthalene

2010-07-22 | GSE12323 | GEO

NaphS2 Gene Expression During Anaerobic Degradation of Naphthalene

Project description:Degradation of polycyclic aromatic hydrocarbons (PAHs) such as naphthalene by anaerobic microorganisms is poorly understood. Strain NaphS2, an anaerobic sulfate reducing marine delta-proteobacterium is capable of using naphthalene and the aromatic compound benzoate, as well as pyruvate, as an electron donors in the presence of sulfate. In order to identify genes involved in the naphthalene degradation pathway, we compared gene expression in NaphS2 during growth on benzoate vs. pyruvate, naphthalene vs. pyruvate, and naphthalene vs benzoate. For each experimental set, aRNA from NaphS2 was labelled Cy5 (experiment) or Cy3(control) with three biological replicates hybridized in duplicate. In addition, because of the size of the predicted genome of NaphS2, ORFs were divided into two separate array designs, designated set1 and set2, such that set1 and set2 represent two separate array designs (probe sets) to be treated separately in statistical analysis.

2010-07-21 | E-GEOD-12323 | biostudies-arrayexpress

Project description:Aromatic Ring-hydroxylating Dioxygenase Gene

| PRJNA869302 | ENA

Transcription profiling by array of Pseudomonas putida KT2440 during exponential phase growing in minimal medium with or without naphthalene

Project description:Transcriptional profile of Pseudomonas putida KT2440 during exponential phase growing in minimal medium saturated with naphthalene compared with the same strain in naphthalene-free medium.

2010-11-01 | E-MEXP-2823 | biostudies-arrayexpress

C/EBPa Regulates Protease/anti-protease Balance and Mediates Bronchiolar Cell Recovery After Injury

Project description:In the present study, we hypothesized that C/EBPa (CCAAT/enhancer-binding protein alpha) plays a role in cell regeneration in response to bronchiolar epithelial cell injury. C/EBPa mediated ciliated cell regeneration after naphthalene bronchiolar epithelial cell injury in vivo. Furthermore, we demonstrated that C/EBPa regulates protease/anti-protease balance after lung injury, and intratracheal treatment with anti-protease (BPTI) restored ciliated cell regeneration after naphthalene injury in CebpaD/D mice. Cebpa d/d VS. Control mice 0hr, 3hr and 72hr after naphthalene injury. Three replicates each.

2012-05-12 | E-GEOD-29285 | biostudies-arrayexpress

C/EBPa Regulates Protease/anti-protease Balance and Mediates Bronchiolar Cell Recovery After Injury

2012-05-13 | GSE29285 | GEO

Grape berry: control vs NAA-treated

Project description:Transcriptional profiling comparing untreated berries (control) with berries treated with NAA (1-Naphthalene acetic acid, an auxin) at the preveraison stage.

2012-11-21 | GSE37341 | GEO

Whole transcriptome analysis of Acinetobacter calcoaceticus Aca13 induced by n-hexadecane or naphthalene

Project description:Petroleum hydrocarbons are recalcitrant contaminants, which has caused most serious environmental problems. Acinetobacter calcoaceticus Aca13 was isolated from petroleum polluted soil for petroleum biodegradation. Hexadecane and naphthalene were used to incubate with Acinetobacter calcoaceticus Aca13. After incubation, the whole transcriptome was obtained from treated groups and control groups, and then used for RNA sequence and analysis. Obtained data in this project will help us understand the biodegradation mechanism of hexadecane and naphthalene, and will be helpful for the bioremediation of petroleum hydrocarbons.

2024-06-30 | GSE235642 | GEO

Polaromonas naphthalenivorans CJ2

Project description:Naphthalene-degrading bacterium

| PRJNA13418 | ENA

Polaromonas naphthalenivorans

Project description:Naphthalene-degrading bacterium

| PRJNA35511 | ENA