Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Genotyping of a mapping population (Nerica4 x DJ123)

PROVIDER: PRJNA870975 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR21158800_1.fastq.gz	Fastqsanger.gz
	SRR21158800_2.fastq.gz	Fastqsanger.gz
	SRR21158900_1.fastq.gz	Fastqsanger.gz
	SRR21158900_2.fastq.gz	Fastqsanger.gz
	SRR21158801_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 420

Similar Datasets

Map the causative gene of hearing loss in Chinese Rongchang pigs by GWAS

2015-05-01 | GSE67618 | GEO

Map the causative gene of hearing loss in Chinese Rongchang pigs by GWAS

Project description:Whole genome genotyping (WGG) arrays are the powerful tools for GWAS in farm animal. Here we take advantage of the commercial Illumina PorcineSNP60 BeadChips, a mapping population including 101 individuals were genotyped. Association analysis and linkage analysis were followed to map the causative gene of hearing loss in Chinese Rongchang pigs. To Mapping the causative gene of hearing loss in Chinese Rongchang pigs, we genotyped 60000 markers in the genome of a mapping population including 101 individuals. Illumina 60K BeadChips were used. Sample types were normal blood samples.

2015-05-01 | E-GEOD-67618 | biostudies-arrayexpress

Population structure and ancestry of Qinchuan cattle by GeneSeek HD Bovine 77k Genotyping BeadChip

Project description:GeneSeek HD Bovine 77k Genotyping array is used to estimate population structure and ancestry of bovine and evaluate loci responsible for complex traits. Further, copy number variation of bovine can be estimated by GeneSeek HD Bovine 77k Genotyping array. Here, we estimate population structure and ancestry of Qinchuan cattle.

2017-06-15 | GSE100038 | GEO

Project description:Genotyping of a mapping population (IR64 x DJ123)

| PRJNA933277 | ENA

Project description:Genotyping of a mapping population (Nerica4 x DJ123)

| PRJNA870681 | ENA

Project description:Genotyping by sequencing of a barley mapping population

| PRJEB1919 | ENA

Becker_etal_SNParray_BSA

Project description:Bulk segregant analysis using microarrays, and extreme array mapping have recently been used to rapidly identify genomic regions associated with phenotypes in multiple species. These experiments, however require the identification of single feature polymorphisms between the cross parents for each new combination of genotypes, which raises the cost of experiments. The availability of the genomic polymorphism data in Arabidopsis thaliana, coupled with the efficient designs of Single Nucleotide Polymorphism (SNP) genotyping arrays removes the requirement for SFP detection and lowers the per array cost, thereby lowering the overall cost per experiment. To demonstrate that these approaches would be functional on SNP arrays and determine confidence intervals, we analyzed hybridizations of natural accessions to the Arabidopsis ATSNPTILE array and simulated BSA or XAM given a variety of gene models, populations, and bulk selection parameters. Our results show a striking degree of correlation between the genotyping output of both methods, which suggests that the benefit of SFP genotyping in context of BSA can be had with the cheaper, more efficient SNP arrays. As a final proof of concept, we hybridized the DNA from bulks of an F2 mapping population of a Sulfur and Selenium ionomics mutant to both the Arabidopsis ATTILE1R and ATSNPTILE arrays, which produced almost identical results. We have produced R scripts that prompt the user for the required parameters and perform the BSA analysis using the ATSNPTILE1 array and have provided them as supplemental data files. Keywords: genomic hybridization of inbred lines and bulked segregant analysis

2010-12-03 | GSE25509 | GEO

Sorghum bicolor

Project description:Genotyping of the Sorghum bicolor Nested Association Mapping (NAM) population

| PRJNA358731 | ENA

Seed color F2 GBS amaranth

Project description:Genotyping by sequencing data for F2 mapping population in amaranth

| PRJEB30533 | ENA

GBS_2HL Hvb

Project description:Genotyping-by-sequencing of a 2HL Hvb F2 mapping population

| PRJEB5084 | ENA