Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Vibrio

ABSTRACT: Vibrio Genome sequencing and assembly

PROVIDER: PRJNA871367 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	SRR21146800_1.fastq.gz	Fastqsanger.gz
	SRR21146800_2.fastq.gz	Fastqsanger.gz
	SRR21146801_1.fastq.gz	Fastqsanger.gz
	SRR21146801_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 17

Similar Datasets

Vibrio alginolyticus iTRAQ

Project description:In recent years, due to the influence of climate change and rising sea temperature, the incidence of Vibrio alginolyticus infections is increasing, and becoming the second most common Vibrio species reported in human illness. Therefore, better understanding of the pathogenic mechanism of V. alginolyticus infection is urgently needed. Vvrr1 (Vibrio virulence regulatory RNA 1) is a new found ncRNA predicted to be closely related to the adhesion ability of V. alginolyticus through the previous RNA-seq. In this study, the target genes of Vvrr1 were fully screened and verified by constructing Vvrr1 over-expressed strains and proteome sequencing technology.

2020-05-26 | PXD014375 | Pride

SNP analysis of ∆motV/∆motW suppressor of Vibrio cholerae

Project description:Whole genome sequencing to identify spontaneous nucleotide substitutions / deletions that allowed suppression of motility defect phenotype in ∆motV or ∆motW of Vibrio cholerae

2021-12-17 | E-MTAB-10691 | biostudies-arrayexpress

dRNA-Seq data for Vibrio campbellii BB120 (ATCC BAA-1116, previously designated as Vibrio harveyi)

Project description:Differential RNA-Seq data for Vibrio campbellii BB120 (ATCC BAA-1116, previously designated as Vibrio harveyi)

2024-07-15 | GSE182898 | GEO

Total differential RNA-seq in the marine proteobacterium Vibrio harveyi

Project description:Objectives: determination of transcription start sites in Vibrio harveyi genome and discovery of new transcripts Methods: we performed differential seqencing of total RNA isolated from o.n. control Vibrio harveyi cultures. Sample treatment with Terminator EXonuclease (TEX) allowed differenciation of primary and secondary transcripts, helping in the definition of transcription start sites (TSS) Results: by data-mining RNA-seq data and performing some Northern Blot experiments we were able to detect new putative small-RNAs, along with these results, a more deep analisys of our RNA-seq data will give futher insight into genetic organization of Vibrio harveyi genome to help in its investigation

2018-03-27 | GSE105060 | GEO

RNA-sequencing analysis of Takifugu rubripes spleen and gill in response to Vibrio harveyi infection

Project description:In this research, we used RNA-sequencing technology to detect genome-wide differentially expressed genes in spleen and gill of Vibrio harveyi -infected Takifugu rubripes.This high-throughput sequencing could help us to understand new mechanisms of action of V. harveyi induced aquaculture fish disease.

2022-02-23 | GSE155911 | GEO

RNAseq analysis of Vibrio cholerae A1552 WT and ∆rvvA (∆VCA0257)

Project description:RNA-sequencing of Vibrio cholerae A1552 wild-type and ∆VCA0257 (∆rvvA) strains grown under virulence-inducing conditions (AKI).

2023-05-12 | GSE230781 | GEO

Vibrio

Project description:Vibrio Genome sequencing and assembly

| PRJNA387524 | ENA

Vibrio

Project description:Vibrio Genome sequencing and assembly

| PRJNA361510 | ENA

Vibrio

Project description:Vibrio genome sequencing and assembly

| PRJNA1036605 | ENA

Vibrio

Project description:Vibrio Genome sequencing and assembly