Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Metapenaeus ensis intestine transcriptomics analysis under decapod iridescent virus 1 (DIV1) challenge

PROVIDER: PRJNA872205 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR21226678_1.fastq.gz	Fastqsanger.gz
	SRR21226678_2.fastq.gz	Fastqsanger.gz
	SRR21226679_1.fastq.gz	Fastqsanger.gz
	SRR21226679_2.fastq.gz	Fastqsanger.gz
	SRR21226680_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 12

Similar Datasets

Project description:Marsupenaeus japonicus intestine transcriptomics analysis under decapod iridescent virus 1 (DIV1) challenge

| PRJNA720250 | ENA

Project description:Marsupenaeus japonicus hemocytes transcriptomics analysis under decapod iridescent virus 1 (DIV1) challenge

| PRJNA720475 | ENA

Project description:Marsupenaeus japonicus intestine miRNA-Seq analysis under decapod iridescent virus 1 (DIV1) challenge

| PRJNA752616 | ENA

Project description:Transcriptome analysis of Penaeus monodon under decapod iridescent virus 1 (DIV1) challenge

| PRJNA684942 | ENA

Decapod iridescent virus 1

Project description:Decapod iridescent virus 1 Genome sequencing and assembly

| PRJNA887207 | ENA

The genetic basis of structural colour variation in mimetic Heliconius butterflies [melpomene]

Project description:We use RNAseq data to perform differential gene expression analysis to identify genes controlling structural colouration in two co-mimetic species of Heliconius butterfly - Heliconius erato and Heliconius melpomene. We use comparisons between iridescent and non-iridescent subspecies of Helcionius erato (H. e. cyrbia and H. e. demophoon, respectively) and Helcionius melpomene (H. m. cythera and H. m. rosina, respectively) at two separate developmental stages, 50% and 70% of development. In addition, in the iridescent subspecies of both H. erato and H. melpomene, we compared the iridescent wing regions (forewing and hindwing combined) to the non-iridescent androconial wing (anterior hindwing) region using differential gene expression.

2021-12-10 | GSE190379 | GEO

Project description:16S rDNA sequencing of intestine of Metapenaeus ensis

| PRJNA872207 | ENA

The genetic basis of structural colour variation in mimetic Heliconius butterflies [erato]

Project description:We use RNAseq data to perform differential gene expression to identify genes controlling structural colouration in two co-mimetic species of Heliconius butterfly - Heliconius erato and Heliconius melpomene. We use comparisons between iridescent and non-iridescent subspecies of Helcionius erato (H. e. cyrbia and H. e. demophoon, respectively) and Helcionius melpomene (H. m. cythera and H. m. rosina, respectively) at two separate developmental stages, 50% and 70% of development. In addition, in the iridescent subspecies of both H. erato and H. melpomene, we compared the iridescent wing regions (forewing and hindwing combined) to the non-iridescent androconial wing region using differential gene expression.

2021-12-10 | GSE190378 | GEO

Expression data in dSTING knockdown and control sibling flies after mock or pathogenic infection

Project description:Parental flies (y1v1;P{TRiP.JF01138}attP2 and y1w*;P{Act5C-GAL4}25FO1/CyO,y+) were mated and 4-7 day old flies were used for all subsequent experiments. dSTING RNAi flies expressed the dsRNA hairpin targeting dSTING and had straight wings, while sibling flies not expressing dSTING dsRNA had curly wings. Pathogens used for inoculation were Listeria monocytogenes, Drosophila C Virus (DCV), and Insect Iridescent virus 6 (IIV6), at the following concentrations: 1e7 CFU/ml, 5e7 TCID50/ml, 5e6 TCID50/ml. Mock inoculation was performed with PBS. Whole flies were homogenized 24 or 72 h post-infection.

2015-09-22 | GSE54833 | GEO

Transcriptomic analysis of KDM4B-mediated genes in AGS cells

Project description:KDM4B, an important epigenetic regulator of cell proliferation, metastasis and genome stability, is often overexpressed in gastric cancer. Notably, elevated expression of KDM4B is associated with a poor clinical outcome. A global transcriptomic analysis between KDM4B control and KDM4B-knockdown AGS cells without or with Helicobacter pylori challenge reveals differentially expressed genes involved in response to virus, multi-organism process, and response to stimulus, suggesting KDM4B as an inducible epigenetic factor under H. pylori challenge.

2019-02-05 | GSE107703 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data