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HD2B and HD2C interact with Argonaute 4 to promote tolerance and heterochromatin stabilization during heat stress [BS-Seq]

ABSTRACT: HD2B and HD2C interact with Argonaute 4 to promote tolerance and heterochromatin stabilization during heat stress [BS-Seq]

PROVIDER: PRJNA873580 | ENA |

REPOSITORIES: ENA

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Dataset's files

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			Action	DRS
	SRR21197494_1.fastq.gz	Fastqsanger.gz
	SRR21197494_2.fastq.gz	Fastqsanger.gz
	SRR21197495_1.fastq.gz	Fastqsanger.gz
	SRR21197495_2.fastq.gz	Fastqsanger.gz
	SRR21197496_1.fastq.gz	Fastqsanger.gz

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HD2B and HD2C interact with Argonaute 4 to promote tolerance and heterochromatin stabilization during heat stress [BS-Seq]

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HD2B and HD2C interact with Argonaute 4 to promote tolerance and heterochromatin stabilization during heat stress

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HD2B and HD2C interact with Argonaute 4 to promote tolerance and heterochromatin stabilization during heat stress [ncRNA-Seq]

Project description:In this study, we show that HD2B/C work with AGO4 to promote heat tolerance

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HD2B and HD2C interact with Argonaute 4 to promote tolerance and heterochromatin stabilization during heat stress [RNA-Seq]

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HD2B and HD2C interact with Argonaute 4 to promote tolerance and heterochromatin stabilization during heat stress [ChIP-Seq]

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HD2B and HD2C interact with Argonaute 4 to promote tolerance and heterochromatin stabilization during heat stress [ncRNA-Seq]

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HD2B and HD2C interact with Argonaute 4 to promote tolerance and heterochromatin stabilization during heat stress [ChIP-Seq]

Project description:HD2B and HD2C interact with Argonaute 4 to promote tolerance and heterochromatin stabilization during heat stress [ChIP-Seq]

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HD2B and HD2C interact with Argonaute 4 to promote tolerance and heterochromatin stabilization during heat stress [RNA-Seq]

Project description:HD2B and HD2C interact with Argonaute 4 to promote tolerance and heterochromatin stabilization during heat stress [RNA-Seq]

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Functional analysis of HD2C in Arabidopsis

Project description:Ribosome biogenesis is a fundamental process required for all cellular activities. Histone deacetylases play critical roles in many biological processes including transcriptional repression and rDNA silencing. However, their function in pre-rRNA processing remains poorly understood. Here, we discovered a previously uncharacterized role of Arabidopsis histone deacetylase HD2C in pre-rRNA processing via both canonical and non-canonical manners. HD2C interacts with HD2B and forms homo- and/or hetero-oligomers in the nucleolus. Depletion of HD2C and HD2B induces a ribosome biogenesis deficiency morphological phenotype and aberrant accumulation of 18S pre-rRNA intermediates. Our genome-wide analysis revealed that HD2C binds and represses the expression of key genes involved in ribosome biogenesis. Using RNA immunoprecipitation and sequencing, we further uncovered a non-canonical mechanism of HD2C directly associating with pre-rRNA and small nucleolar RNAs to regulate rRNA methylation. Together, this study reveals a multifaceted role of HD2C in ribosome biogenesis and provides mechanistic insights into how histone deacetylases modulate rRNA maturation at both transcriptional and post-transcriptional levels.

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HD2B and HD2C interact with Argonaute 4 to promote tolerance and heterochromatin stabilization during heat stress

Project description:This SuperSeries is composed of the SubSeries listed below.

2023-08-12 | GSE212022 | GEO