Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Sponge microbiome

ABSTRACT: Metagenomes of microbiota from Antarctic sponges

PROVIDER: PRJNA874040 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR25758456_1.fastq.gz	Fastqsanger.gz
	SRR25758456_2.fastq.gz	Fastqsanger.gz
	SRR25758457_1.fastq.gz	Fastqsanger.gz
	SRR25758457_2.fastq.gz	Fastqsanger.gz
	SRR25758458_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 18

Similar Datasets

sponge microbiome

Project description:Amplicon sequences of Microbiota from Antarctic Sponges

| PRJNA870453 | ENA

sponge microbiome

Project description:Metagenome-Assembled Genome of microbiota from Antarctic sponges

| PRJNA871246 | ENA

Complete metabolic reconstruction of the microbiome of the model sponge Ianthella basta

Project description:Marine sponges are essential for coral reefs to thrive and harbour a diverse microbiome that is thought to contribute to host health. Although the overall function of sponge symbionts has been increasingly described, in-depth characterisation of each taxa remains challenging, with many sponge species hosting up to 3,000 distinct microbial species. Recently, the sponge Ianthella basta has emerged as a model organism for symbiosis research, hosting only three dominant symbionts: a Thaumarchaeotum, a Gammaproteobacterium, and an Alphaproteobacterium and a range of other minor taxa. Here, we retrieved metagenome assembled genomes (MAGs) for >90% of I. basta’s microbial community which allowed us to make a complete metabolic reconstruction of the sponge’s microbiome, identifying metabolic complementarity between microbes, as well as the importance of symbionts present in low abundance. We also mined the metagenomes for putative viral sequences, highlighting the contribution of viruses to the overall metabolism of the sponge, and complement this data with metaproteomic sequencing to identify active metabolic pathways in both prokaryotes and viruses. This data now allows us to use I. basta as a model organism for studying host-microbe interactions and provides a basis for future (genomic) manipulative experiments.

2023-02-24 | PXD032278 | Pride

sponge metagenome

Project description:Bacterial microbiome associated with Antarctic marine sponges. Amplicon raw sequences reads.

| PRJNA611843 | ENA

sponge metagenome

Project description:Metagenomes of microbes from marine sponges living in Papua New Guinea volcanic CO2 seeps.

| PRJNA488959 | ENA

sponge metagenome

Project description:Sponges Metagenome

| PRJNA325781 | ENA

sponge development

Project description:In order to compare sponge and eumetazoan (higher animal) body plans, we identified and studied expression of a broad range of eumetazoan developmental regulatory genes in Sycon ciliatum (Calcispongiae). In this species, embryonic development is semi-synchronous within a population, synchronous within individuals, and oocytes and embryos occupy a significant fraction of the volume of the sponges during the reproductive period. RNASeq libraries representing non-reproductive (somatic) tissue slices along the body axis, as well as oocytes, embryos and free swimming larvae were generated from material obtained by sampling throughout the life cycle.

2014-05-01 | E-MTAB-2431 | biostudies-arrayexpress

sponge metagenome

Project description:Marine sponges Metagenome

| PRJNA214188 | ENA

sponge body plan

2014-05-01 | E-MTAB-2430 | biostudies-arrayexpress

sponge metagenome

Project description:sponges from Indonesian marine lake

| PRJNA391175 | ENA