Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Quantitative Analysis of mid-L4 WT worms after P. aeruginosa PA01 infection for 12 hours

ABSTRACT: Quantitative Analysis of mid-L4 WT worms after P. aeruginosa PA01 infection for 12 hours

PROVIDER: PRJNA875663 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Similar Datasets

Quantitative Analysis of mid-L4 WT worms after P. aeruginosa PA01 infection for 12 hours

Project description:To identify candidate genes whose expressions were regulated by P. aeruginosa PA01, we used RNA-Seq analysis to study the transcriptomic profiles of mid-L4 worms exposed to P. aeruginosa PA01 for 12 hours. Differential expression analysis was performed by comparing WT worms exposed to P. aeruginosa PA01 for 12 hours versus worms fed E. coli OP50.

2022-09-04 | GSE212511 | GEO

To identify candidate genes whose expressions were regulated by the histone H4 modifications during P. aeruginosa PA01 exposure

Project description:Chromatin immunoprecipitation DNA-sequencing (ChIP-seq) for the histone modifications H4K5ac and H4K8ac in mid-L4 WT worms exposed to P. aeruginosa PA01 for 12 hours.

2022-09-04 | GSE212510 | GEO

Expression data from C. elegans during L4, L4-lethargus, and Adult

2014-04-18 | GSE46289 | GEO

Expression data from C. elegans during L4, L4-lethargus, and Adult

Project description:To identify genes differentially expressed during the molt, we collected RNA 30-40 minutes after feeding cessation at the start of the fourth larval stage (L4) lethargus. Additional time points for RNA collection were in the mid-L4 stage, approximately four hours prior to lethargus, and in the young adult stage, four hours after lethargus. These samples were interrogated with the Affymetrix C. elegans Genome Array. A total of 1,804 gene transcripts were up regulated, and 1,088 gene transcripts were down regulated, during the L4 lethargus period compared to the L4 and Adult stages (false discovery rate (FDR) < 0.05). There were a total of 3 groups and 5x replication for each group, for 15 total samples that were analyzed. The groups were (1) L4, (2) L4-lethargus, (3) Adult. We generated the following pairwise comparisons using R/maanova: L4-lethargus vs L4, L4-lethargus vs Adult. The permutation based p-values for each test were multiplied by 2 and transcripts with an FDRM-bM-^IM-$5% were selected.

2014-04-18 | E-GEOD-46289 | biostudies-arrayexpress

TurboID of MSTR-1::TurboID expresing worms (complete)

Project description:TurboID of MSTR-1 compared to wild-type (N2) worms at L4 stage grown on OP50 (biotin +) at 25C in biological triplicate.

2021-10-01 | MSV000088183 | MassIVE

RNA-seq of N2 and HBR227 worms in L1 arrest (48 hours)

Project description:We report the gene expression in L1 arrest (48 hours) of wild-type sleeping worms (N2) and aptf-1(gk794) mutant sleepless worms (HBR227)

2022-02-28 | GSE196158 | GEO

RNA-seq of N2, HBR2340 and PHX2193 worms in L1 arrest (48 hours)

Project description:We report the gene expression in L1 arrest (48 hours) of wild-type sleeping worms (N2) and RIS-manipulated worms (HBR2340 and PHX2193)

2022-02-28 | GSE196380 | GEO

RNA-Seq of L4 C. elegans

Project description:RNA-seq libraries were generated for L4 wildtype worms to analyze RNA abundance at this point in development.

2017-10-19 | GSE104500 | GEO

Azoarcus sp. PA01

Project description:Azoarcus sp. PA01 Genome sequencing and assembly

| PRJNA280039 | ENA

RNA-seq of N2 and HBR227 worms in L1 arrest (48 hours)

Project description:RNA-seq of N2 and HBR227 worms in L1 arrest (48 hours)

| PRJNA803492 | ENA