Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Raw Illumina sequences of RAD-seq of Amorphophallus yunnanensis

PROVIDER: PRJNA876592 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR21413600_1.fastq.gz	Fastqsanger.gz
	SRR21413600_2.fastq.gz	Fastqsanger.gz
	SRR21413601_1.fastq.gz	Fastqsanger.gz
	SRR21413601_2.fastq.gz	Fastqsanger.gz
	SRR21413602_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 274

Similar Datasets

Amorphophallus konjac

Project description:Amorphophallus konjac Raw sequence reads of RAD-seq

| PRJNA797717 | ENA

Genomic resources for population analyses of an invasive pest Oryctes rhinoceros

Project description:Dataset containing 7,369,481 variants called across 393 O. rhinoceros and OrNV samples from 16 populations, using the previously published raw sequences generated in 9 different experiments (RAD-Seq, RNA-Seq, WGS).

2023-02-08 | PRJEB59266 | EVA

Project description:Raw data for the complete chloroplast genome assembly of Amorphophallus yunnanensis

| PRJNA1006506 | ENA

Transcriptome expression of WT and mir163 mutant

Project description:To understand regulation mechanism of miR163, transcriptomes of WT and mir163 mutant plants were dissected. Total RNAs from 7-day-old seedlings were isolated for library construction and analyzed by RNA-seq via Illumina HiSeq platform. Raw sequences were obtained from the Illumina Pipeline software Illumina bcl2fastq v2.17.1.14 and expected to generate 6 G per sample.

2023-10-11 | GSE228555 | GEO

Project description:Anasa tristis rad-seq sequences

| PRJNA811582 | ENA

Transcriptome expression of WT, 160OE, arf10, arf16, and arf17 Arabidopsis seedlings treated with/without heat stress

Project description:7-day-old seedlings were treated with heat stress at 44oC for 30 min. Total RNAs were isolated for library construction and analyzed by RNA-seq via Solexa platform. Raw sequences were obtained from the Illumina Pipeline software bcl2fastq v2.0 and expected to generate 20M (million reads or Gb) per sample.

2018-02-13 | GSE103041 | GEO

Project description:Texas pocket gopher RAD-SEQ sequences

| PRJNA1181766 | ENA

Prolactin-induced protein (PIP) regulates proliferation of luminal A type breast cancer cells in a hormone-independent manner

Project description:RNA was extracted from cells using Aurum Total RNA kit from Bio-Rad Laboratories, Inc., Hercules, CA following the manufacturer’s recommendations. Gene expression profiling was performed using the BeadChip HumanHT-12 v4 Expression kit from Illumina®, which contains 47,231 gene-probes (Illumina® Inc., San Diego, CA). The raw signal intensities were imported and analyzed using the GenomeStudio® data software. After background subtraction and normalization, the signal intensity values were exported to the Partek® genomics expression analysis suite using “Partek's Report Plug-in” option in the GenomeStudio® software. Differentially expressed genes in the dox- versus vehicle-treated samples were identified using the “gene expression” workflow in the Partek® software.

2012-10-29 | GSE41894 | GEO

Discovery of cis-spliced chimeric RNAs between adjacent genes in human prostate cells

Project description:Total RNA extracted from prostate cancer LNCaP cells transfected with siRNA against CTCF(siCTCF), or negative control siRNA (si-)were processed, and sequenced by two different companies using Illumina Hi-seq 2000 platform to generate RNA sequencing with two output sequences: paired-end 50bp and 101bp in read length. Nearly 100 million and 50 million raw reads were yielded from each sample respectively. We used FastQC to confirm the quality of raw fastq sequencing data, and SOAPfuse software to detect fusion transcripts.

2015-02-09 | GSE63487 | GEO

Project description:The restriction site-associated DNA sequencing (RAD-seq) of Amorphophallus albus germplasms

| PRJNA715021 | ENA