Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Human saliva metagenome

ABSTRACT: Salivary microbial community diversity

PROVIDER: PRJNA879903 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR21540700_1.fastq.gz	Fastqsanger.gz
	SRR21540700_2.fastq.gz	Fastqsanger.gz
	SRR21540701_1.fastq.gz	Fastqsanger.gz
	SRR21540701_2.fastq.gz	Fastqsanger.gz
	SRR21540702_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 160

Similar Datasets

human saliva metagenome

Project description:Salivary microbial community diversity

| PRJNA879312 | ENA

human saliva metagenome

Project description:Salivary microbial diversity

| PRJNA879443 | ENA

Homo sapiens saliva

Project description:Human salivary microbial community diversity in AIDS patients

| PRJNA844037 | ENA

human saliva metagenome

Project description:Salivary microbiota of 272 Japanese adults

| PRJDB16112 | ENA

human saliva metagenome

Project description:Salivary microbiota of 62 Japanese adults

| PRJDB16115 | ENA

human saliva metagenome

Project description:salivary microbiome in children with and without Down syndrome

| PRJDB12092 | ENA

Study of microbial functional structure in Xiangjiang River sediment

Project description:Xiangjiang River (Hunan, China) has been contaminated with heavy metal for several decades by surrounding factories. However, little is known about the influence of a gradient of heavy metal contamination on the diversity, structure of microbial functional gene in sediment. To deeply understand the impact of heavy metal contamination on microbial community, a comprehensive functional gene array (GeoChip 5.0) has been used to study the functional genes structure, composition, diversity and metabolic potential of microbial community from three heavy metal polluted sites of Xiangjiang River. Three groups of samples, A, B and C. Every group has 3 replicates.

2016-08-02 | E-GEOD-85064 | biostudies-arrayexpress

Human Saliva Metagenome

Project description:Impact of the circadian system and circadian misalignment on human salivary microbiome

| PRJNA529227 | ENA

HuMiChip analysis of Saliva microbiota

Project description:Human saliva microbiota is phylogenetically divergent among host individuals yet their roles in health and disease are poorly appreciated. We employed a microbial functional gene microarray, HuMiChip 1.0, to reconstruct the global functional profiles of human saliva microbiota from ten healthy and ten caries-active adults. Saliva microbiota in the pilot population featured a vast diversity of functional genes. No significant distinction in gene number or diversity indices was observed between healthy and caries-active microbiota. However, co-presence network analysis of functional genes revealed that caries-active microbiota was more divergent in non-core genes than healthy microbiota, despite both groups exhibited a similar degree of conservation at their respective core genes. Furthermore, functional gene structure of saliva microbiota could potentially distinguish caries-active patients from healthy hosts. Microbial functions such as Diaminopimelate epimerase, Prephenate dehydrogenase, Pyruvate-formate lyase and N-acetylmuramoyl-L-alanine amidase were significantly linked to caries. Therefore, saliva microbiota carried disease-associated functional signatures, which could be potentially exploited for caries diagnosis. The DMFT INDEX (Decayed, Missing, Filled [DMF] teeth index used in dental epidemiology) values are provided for each sample We employed a microbial functional gene microarray, HuMiChip 1.0, to reconstruct the global functional profiles of human saliva microbiota from ten healthy and ten caries-active adults.

2013-08-15 | E-GEOD-49875 | biostudies-arrayexpress

human saliva metagenome

Project description:16S amplicon sequence of human salivary microbiome every 4 hours for 3 days

| PRJDB5388 | ENA