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RNA-Seq based gene expression profiling of mouse Meis1-Meis2 double KO or wild-type atria and ventricles

ABSTRACT: RNA-Seq based gene expression profiling of mouse Meis1-Meis2 double KO or wild-type atria and ventricles

PROVIDER: PRJNA880590 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR21570700.fastq.gz	Fastqsanger.gz
	SRR21570701.fastq.gz	Fastqsanger.gz
	SRR21570702.fastq.gz	Fastqsanger.gz
	SRR21570584.fastq.gz	Fastqsanger.gz
	SRR21570585.fastq.gz	Fastqsanger.gz

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RNA-Seq based gene expression profiling of mouse Meis1-Meis2 double KO or wild-type atria and ventricles (Embryo).

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Identification of gene targets of Meis2

Project description:The homeodomain protein Meis1 is essential for definitive hematopoiesis and vascular patterning in the mouse embryo. Meis2, another member of the same family, shares 82% protein identities with Meis1. Our present study suggested Meis2 exerts two distinguishable effects in differentiating ES cells. First, it increases the numbers of hematopoietic progenitors and extends their persistence in culture. Second, Meis2 skews hematopoietic differentiation by suppressing erythroid while enhancing megakaryocytic progenitor differentiation. To identify the underlying transcriptional bases of these actions, we carried out microarray analysis to compare the various populations of cells developing in ES differentiation cultures in the presence and absence of Meis2 induction. ES cells with dox-inducible Meis2 (A2lox.Meis2) were differentiated as embryoid bodies (EBs) for 6 days before plating on OP9-GFP cell monolayers and cytokines, and treated with (+) or without (-) doxycycline (dox). Cells were purified by cell sorting on day 7 or 8 into various populations based on levels of CD41 expression: GFP-CD41-, GFP-CD41+ (day 7) and GFP-CD41-,GFP-CD41int, and GFP-CD41hi (day 8). Gene expression of these purified populations was determined by microarray analysis.

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