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Hi-C data from Drosophila melanogaster cell line Kc167 in different osmostress conditions.

ABSTRACT: Hi-C data from Drosophila melanogaster cell line Kc167 in different osmostress conditions.

PROVIDER: PRJNA881467 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR21607445_1.fastq.gz	Fastqsanger.gz
	SRR21607445_2.fastq.gz	Fastqsanger.gz
	SRR21607446_1.fastq.gz	Fastqsanger.gz
	SRR21607446_2.fastq.gz	Fastqsanger.gz
	SRR21607447_1.fastq.gz	Fastqsanger.gz

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ATAC-seq data from Drosophila melanogaster cell line Kc167 in different osmostress conditions

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ChIP-seq and data from Drosophila melanogaster cell line Kc167 in different osmostress conditions.

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Hi-C data from Drosophila melanogaster cell line Kc167 in different osmostress conditions.

Project description:Chromatin is organized into a 3D interwoven tapestry of multi-layer architectural features important for controlling gene expression. How distinct layers influence each other and quickly they quickly they respond to cellular environment is unclear. Using Hi-C in Drosophila melanogaster, we measure how 3D chromatin organization responds to cellular hyperosmotic stress. In combination with the hd-pairing method, we demonstrate that chromosome unpairing represents a fast an reversible response to hyperosmotic stress. We identify a novel function of the Z4 protein as an anti-pairer, which we demonstrate is necessary for changes to chromatin organization during hyperosmotic stress. Finally, we demonstrate how changes to pairing impacts the other interwoven layers of 3D chromatin organization.

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ATAC-seq data from Drosophila melanogaster cell line Kc167 in different osmostress conditions

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ChIP-seq and data from Drosophila melanogaster cell line Kc167 in different osmostress conditions.

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modENCODE RNA-Seq of Drosophila cell line Kc167

Project description:Deep Sequencing of mRNA from the Drosophila melanogaster Kc167 cell line. For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf

2009-07-15 | GSE17107 | GEO

modENCODE RNA-Seq of Drosophila Kc167

Project description:Deep Sequencing of Kc167 mRNA. For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf Seq of Poly-A+ RNA from D. melanogaster Kc167

2009-09-10 | E-GEOD-18040 | biostudies-arrayexpress

modENCODE RNA-Seq of Drosophila Kc167 small RNAs

Project description:Deep Sequencing of Kc167 small RNAs. For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf Seq of small RNAs from D. melanogaster Kc167

2009-09-10 | E-GEOD-18036 | biostudies-arrayexpress

modENCODE RNA-Seq of Drosophila cell line Kc167

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small RNA from Drosophila melanogaster - cell line Kc167

Project description:High-throughput sequencing of Drosophila melanogaster small RNAs from Kc167 cells. total RNA, ~18-26nt RNAs isolated using PAGE, ligation to adapters requires 5' monophosphate and 3' OH Keywords: small RNA discovery and profiling For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf

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