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Bulk RNAseq analysis of dorsal root ganglia from global Nav1.7 knockout mice

ABSTRACT: Bulk RNAseq analysis of dorsal root ganglia from global Nav1.7 knockout mice

PROVIDER: PRJNA882499 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR21647376.fastq.gz	Fastqsanger.gz
	SRR21647377.fastq.gz	Fastqsanger.gz
	SRR21647378.fastq.gz	Fastqsanger.gz
	SRR21647379.fastq.gz	Fastqsanger.gz
	SRR21647380.fastq.gz	Fastqsanger.gz

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Bulk RNAseq analysis of dorsal root ganglia from global Nav1.7 knockout mice

Project description:We investigated changes in gene expression of dorsal root ganglia (DRG) isolated from global (pCAGG-CreER x Nav1.7 floxed) Nav1.7 knockout mice using bulk RNA sequencing. We found an upregulation of Penk and downregulation of Ceacam10 in Nav1.7 knockouts compared to controls, as well as other gene expression changes similar to those previously reported for Nav1.7 knockout mice (https://doi.org/10.1038/ncomms9967). We identified that genes selectively expressed in the C low-threshold mechanoreceptor (cLTMR) class of DRG neurons showed a general reduction in expression in Nav1.7 knockouts compared to littermate controls.

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Project description:We investigated changes in gene expression and cell type abundance using single cell RNA sequencing of dorsal root ganglia (DRG) isolated from global (pCAGG-CreER x Nav1.7 floxed) and C-low threshold mechanoreceptor (cLTMR)-specific (Slc17a8-Cre x Nav1.7 floxed) Nav1.7 knockout mice. We identified a reduction in the fraction of cLTMRs and a concomitant emergence of a distinct cell cluster located closely to cLTMRs in the UMAP projection in global Nav1.7 knockout DRGs. This novel cell cluster expressed previously described cLTMR markers with distinct gene expression changes such as a downregulation of Ceacam10 and an upregulation of Penk expression. We further found that cLTMR-specifc knockout of Nav1.7 induced the same shift in cLTMR cells to a knockout-specific cluster with upregulated Penk expression.

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