Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

A MTA2-SATB2 chromatin complex restrains colonic plasticity toward small intestine by retaining HNF4A at colonic chromatin

ABSTRACT: A MTA2-SATB2 chromatin complex restrains colonic plasticity toward small intestine by retaining HNF4A at colonic chromatin

PROVIDER: PRJNA882834 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR21660000_1.fastq.gz	Fastqsanger.gz
	SRR21660000_2.fastq.gz	Fastqsanger.gz
	SRR21660001_1.fastq.gz	Fastqsanger.gz
	SRR21660001_2.fastq.gz	Fastqsanger.gz
	SRR21660002_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 84

Similar Datasets

ChIP-seq of colonic intestine epithelium from Vil-CreER;MTA2F/F (MTA2KO), Vil-CreER;SATB2F/F(SATB2KO) and Wild Type mice

Project description:We use ChIP-seq to understand the genomic binding sites of MTA2 in colonic epithelium and to study the shifting of SATB2 and HNF4A's genomic binding sites after MTA2 loss in colonic epithelium.

2024-03-08 | GSE213877 | GEO

Bulk RNA-seq of CRISPR SATB2 Knockout Human Colonic Organoids

Project description:To evaluate SATB2 function in human colonic epithelium, we knocked out the SATB2 gene in 3D cultured human colonic organoid.

2021-10-05 | GSE167285 | GEO

ChIP-seq of Colonic Intestine Epithelium from Satb2-deficient and WT mice

Project description:We use ChIP-seq to understand the genomic binding sites of SATB2 in colonic epithelium and to study the shifting of CDX2 and HNF4A's genomic binding sites after SATB2 loss in colonic epithelium.

2021-10-05 | GSE167287 | GEO

A MTA2-SATB2 chromatin complex restrains colonic plasticity toward small intestine by retaining HNF4A at colonic chromatin

Project description:This SuperSeries is composed of the SubSeries listed below.

2024-03-07 | GSE213880 | GEO

CUT&RUN Analysis of Satb2 Binding in Colonic Stem Cells and Differentiated Cells

Project description:Understanding satb2 binding difference in colonic stem cells and differentiated cells

2021-10-05 | GSE180029 | GEO

Bulk RNA-seq of Early Time Course Colonic Epithelia from Satb2-deficient and WT mice

Project description:Given that SATB2 is expressed in differentiated colonic cells as well as the stem cells, we evaluated whether SATB2 might directly regulate the identity of the differentiated cells

2021-10-05 | GSE180023 | GEO

Bulk RNA-seq of Mouse Colonic Organoids: SATB2 and FOXD2KO CRISPR Knockout

Project description:CRISPR knock out the Satb2 or Foxd2 gene from mouse colonic organoids to validate core human and mouse large intestine stem cell enrich TFs.

2021-10-05 | GSE167283 | GEO

Bulk RNA-seq of mouse colonic organoids: CRISPR functional Screening of Satb2-interact proteins (NuRD and SWI/SNF complex)

Project description:CRISPR knock out the NuRD and SWI/SNF complex gene from mouse colonic organoids to validate the potential function with SATB2.

2024-03-07 | GSE213878 | GEO

ChIP-seq for Satb2 in E15 cortex

Project description:The goal of the study was to identify the binding site of SATB2 in wild-ype cortex by performing ChIP-seq using SATB2 antibody. E15 cortical tissues were dissected, lysed and fixed. Chromatin was prepared by sonication. Sequences bound by SATB2 protein was precipitated using a SATB2 antibody. Sequencing was performed on Illumina Genome Analyzer II. SATB2 binding peaks were called using MACS. ChIP for Satb2, followed by sequencing on Illumina Genome Analyzer II platform

2015-09-08 | E-GEOD-68910 | biostudies-arrayexpress

ATAC-seq of Intestine Epithelia (Ileum and Colon) from Satb2-deficient and WT mice

Project description:The goal of this study is to study the chromatin accessibility signature after Satb2 gene loss in the colonic epithelium.

2021-10-05 | GSE148690 | GEO