Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Hordeum vulgare subsp. vulgare

ABSTRACT: Cloning the barley nec3 disease lesion mimic mutant using complementation by sequencing

PROVIDER: PRJNA885394 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR21763616_1.fastq.gz	Fastqsanger.gz
	SRR21763616_2.fastq.gz	Fastqsanger.gz
	SRR21763617_1.fastq.gz	Fastqsanger.gz
	SRR21763617_2.fastq.gz	Fastqsanger.gz
	SRR21763618_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 16

Similar Datasets

Hordeum vulgare

Project description:Transcriptome analysis of the barley fast neutron mutants nec3

| PRJNA130625 | ENA

Hordeum vulgare Transcriptome or Gene expression

Project description:We hypothesized that the genome segments of cultivated barley should show certain similarity with its ancestral wild barley. Instead of whole genome sequences, we employed RNA-Seq to investigated the genomic origin of modern cultivated barley using some representative wild barley genotypes from the Near East and Tibet, and representative world-wide selections of cultivated barley.

2014-10-06 | E-MTAB-4221 | biostudies-arrayexpress

Hordeum vulgare Transcriptome or Gene expression

Project description:Analysis of the barley leaf transcriptome under salinity stress using mRNA-Seq.

2012-12-31 | E-MTAB-4428 | biostudies-arrayexpress

Hordeum vulgare strain:Morex

Project description:Cloning and Functional Analysis Agronomically Important Genes on Barley

| PRJDB6438 | ENA

Hordeum vulgare strain:landrace Transcriptome or Gene expression

Project description:In the present study, we investigated the transcriptome features during hulless barley grain development. Using Illumina paired-end RNA-Sequencing, we generated two data sets of the developing grain transcriptomes from two hulless barley landraces.

2014-06-19 | E-MTAB-4307 | biostudies-arrayexpress

RNA sequencing of Hordeum vulgare near isogenic lines

Project description:NILs containing five parental lines, three wild barley genotypes ssp. spontaneum: HID 4 (A), Iraq; HID 64 (B), Turkey; and HID 369 (C), Israel, one ssp. agriocrithon: HID 382(D)) and cv. Morex (ssp. vulgare, USA). Purpose: Variant calling to identifie markers associated with a awn length QTL on the distal part of chromosome 7HL

2017-03-08 | GSE85338 | GEO

Transcriptome analysis of the barley fast neutron mutants nec3

Project description:Affymetrix Barley1 GeneChip microarray was used to study the transcriptome of two fast neutron barley mutants FN362 and FN363 allelic to characterized necrotic leaf spot 3 (nec3) mutants. PCR screening of the 21 genes at least two-fold down-regulated in mutants did not show any deletions in the genome of mutants and, thus, failed to identify a gene responsible for the nec3 mutant phenotype suggesting that either probe set for the NEC3 gene is not on the Barley1 GeneChip, or that the expression of wt NEC3 is confined to specific developmental stage or tissue type.

2010-08-25 | GSE23775 | GEO

Hordeum strain:vulgare L., Bowman

Project description:Barley sca mutant

| PRJDB18689 | ENA

Functional Genomic Analysis Of Barley(Hordeum vulgare L.) Grain Protein Accumulation

Project description:Effect of high grain protein locus on barley grain protein accumulation. Gene expression levels were analysed in Karl, a low grain protein variety with its near-isogenic line 10_11(has high grain protein locus, chromosome 6)using Barley1 22k affymetrix chip. ****[PLEXdb(http://www.plexdb.org) has submitted this series at GEO on behalf of the original contributor, Aravind Jukanti. The equivalent experiment is BB53 at PLEXdb.]

2011-11-22 | GSE33413 | GEO

Genome-Wide analysis of gene expression responses to waterlogging stress in roots of barley (Hordeum vulgare L.)

Project description:Waterlogging is a major abiotic stress causing oxygen depletion and carbon dioxide accumulation in the rhizosphere. Barley is more susceptible to waterlogging stress than other cereals. To gain a better understanding of the effect of waterlogging stress in barley, we carried out a genome-wide gene expression analysis in roots of Yerong and Deder2 barley genotypes under waterlogging and control (well-watered) conditions by RNA-Sequencing, using Illumina HiSeq™ 4000 platform.

2020-02-14 | GSE144077 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data