Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Nanopore-based detection of Fig virus B from Ficus

PROVIDER: PRJNA887841 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR21871327_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 1 of 1

Similar Datasets

Systematic comparison of tools used for m6A mapping from nanopore direct RNA sequencing

Project description:State-of-the-art algorithms for m6A detection and quantification via nanopore direct RNA sequencing have been continuously developed, little is known about their capacities and limitations, which makes a comprehensive assessment in urgent need. Therefore, we performed comprehensive benchmarking of 10 computational tools relying on current-based and base-calling “errors” strategies for m6A detection by nanopore sequencing.

2023-03-01 | GSE195618 | GEO

Transcriptome, proteome, and volatile organic compounds analysis the pathways of terpenoid synthesis in bracts in the interaction between Ficus hirta Vahl and pollinators

Project description:Quantitative proteome of Ficus hirta fig bracts. Three replicates were set for each sample.

2022-07-29 | PXD034948 |

Project description:multiplex RPA based Nanopore sequencing for real-time detection of virus

| PRJNA638039 | ENA

Ficus carica strain:Masui Dauphine

Project description:draft genome sequence of fig (Ficus carica)

| PRJDB15330 | ENA

Fig and fig wasp mutualism

Project description:A striking property of the ancient and obligate mutualism between figs and their pollinating wasps is that fig wasps consistently oviposit in the inner flowers of the fig syconium (gall flowers, which develop into galls that house developing larvae), but typically do not use the outer ring of flowers (seed flowers, which develop into seeds). To better understand differences between gall and seed flowers that might influence oviposition choices, and the unknown mechanisms underlying gall formation, we used a metatranscriptomic approach to analyze eukaryotic gene expression within fig flowers at the time of oviposition choice and early gall development. Consistent with the unbeatable seed hypothesis, which posits that only a portion of fig flowers are physiologically capable of responding to gall induction or supporting larval development, we found significant differences in gene expression assigned to defense and metabolism between gall- and seed flowers in receptive syconia. Transcripts assigned to flavonoids and defense were especially prevalent in receptive gall flowers, and carbohydrate metabolism was significantly up-regulated relative to seed flowers. In turn, high expression of the venom gene icarapin during wasp embryogenesis within galled flowers distinguishes it as a candidate gene for gall initiation. In response to galling, the fig significantly up-regulates the expression of chalcone synthase, which previously has been connected to gall formation in other plants. This study simultaneously evaluates the gene expression profile of both mutualistic partners in a plant-insect mutualism and provides evidence for a stability mechanism in the ancient fig-fig wasp association. We examined two different Ficus flower types at two different time points. Each sample contained a pool of hundreds of individual flowers from multiple sycomia.

2015-03-05 | E-GEOD-55700 | biostudies-arrayexpress

Ficus carica cultivar:fig

Project description:Ficus carica cultivar:fig Transcriptome or Gene expression

| PRJNA438437 | ENA

Project description:Phylogeny of Fig wasps associated with Ficus racemosa

| PRJNA700680 | ENA

Project description:Nanopore-based detection and characterization of yam viruses

| PRJNA488049 | ENA

Aedes notoscriptus

Project description:Virus detection in mosquitoes using MinION nanopore sequencing

| PRJNA386415 | ENA

Project description:Fig wasps associated with Ficus racemosa Raw sequence reads