Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Physeter macrocephalus strain:female

ABSTRACT: Physeter macrocephalus Genome Sequencing

PROVIDER: PRJNA89089 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	SRR1031996_1.fastq.gz	Fastqsanger.gz
	SRR1031996_2.fastq.gz	Fastqsanger.gz
	SRR1031997_1.fastq.gz	Fastqsanger.gz
	SRR1031997_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 255

Similar Datasets

Physeter macrocephalus

Project description:Physeter macrocephalus Transcriptome or Gene expression

| PRJNA677862 | ENA

Physeter macrocephalus

Project description:Physeter macrocephalus Transcriptome or Gene expression

| PRJNA177694 | ENA

Physeter macrocephalus

Project description:Sperm whale Genome sequencing and assembly

| PRJNA411766 | ENA

Female, juvenile, and calf sperm whale <i>Physeter macrocephalus</i> (Linnaeus 1758) records from Ireland.

Project description:Sperm whales spatially segregate by sex and social behavior as they mature. In the North Atlantic, male whales move to higher latitudes as far as Svalbard at 80° N, while females and young whales typically remain around lower latitudes below 40-45° N. The Azores, Madeira, and the Canary Islands constitute important nursery grounds for female and young sperm whales. Irish waters represent a midpoint for this species' spatial segregation in the Northeast Atlantic, where the species occurs along the submarine canyon systems to the west of the country. Historically, just male whales were thought to be found in this region between 51 and 55° N, but one adult female was caught by commercial whalers in 1910, and a 5.49 m calf was found stranded in 1916. Between 1995 and 2023, 10 female sperm whales have been stranded around the coast of Ireland. Eight of these whales have been stranded since 2013, and there has been at least one stranding per year between 2019 and 2023. Four of these strandings have occurred in Donegal in the northwest of Ireland, indicating the presence of female whales along the continental shelf off this region. Two females were stranded within a day of each other and were found in similar states of decomposition in February 2022, indicating that they may have been part of the same group rather than being lone vagrant individuals. Sperm whale calves and juveniles were also sighted in Irish waters in 2001, 2004, and 2010 in the Rockall Trough, along the Porcupine Bank and Goban Spur, where between 1 and 3 individuals were observed on four occasions while one calf live stranded in 2004. These records indicate a historical presence of female and young sperm whales in this region but that an apparent increase in occurrence has taken place over the past decade.

| S-EPMC11366682 | biostudies-literature

Comparative genomic analysis revealed twenty-six candidate genes involved in the air-breathing function of the broadhead catfish Clarias macrocephalus

Project description:Walking catfish (Clarias macrocephalus) and channel catfish (Ictalurus punctatus) are freshwater fish species of the Siluriformes order. C. macrocephalus has both gills and modified gill structures serving as an air breathing organ (ABO) which allows them aerial breathing (AB), while I. punctatus does not possess an air-breathing organ (ABO), and thus cannot breathe in air. These two species provide an excellent model for studying the molecular basis of accessory air-breathing organ development in teleost fish. In this study, seven development stages in C. macrocephalus were selected for RNA-seq analysis to compare with channel catfish as the time when air breathing organ developed and became functional. Through comparative genetic contents analysis, 1,458 genes were identified to be present in C. macrocephalus, but absent from I. punctatus. Gene expression analysis and protein-protein intersection (PPI) analysis were performed, 26 genes were selected in C. macrocephalus, including mb, ngb, hbae genes, which are mainly associated with oxygen carrier activity, oxygen binding and heme binding activities. Our work provides a large data resource for exploring the genomic basis of air breathing function in C. macrocephalus and offers an insight into the adaption of aquatic organisms to hypoxia and high ammonia environment.

2020-12-09 | GSE151993 | GEO

Physeter macrocephalus

Project description:sperm whale

| PRJNA89335 | ENA

Gadus macrocephalus

Project description:Gadus macrocephalus alternate pseudohaplotype genome sequencing

| PRJNA943285 | ENA

Gadus macrocephalus

Project description:Gadus macrocephalus Genome sequencing and assembly

| PRJNA879272 | ENA

Clarias macrocephalus

Project description:Clarias macrocephalus Genome sequencing and assembly