Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Lycodon rufozonatus

ABSTRACT: Lycodon rufozonatus Raw sequence reads

PROVIDER: PRJNA892747 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR22062100_1.fastq.gz	Fastqsanger.gz
	SRR22062100_2.fastq.gz	Fastqsanger.gz
	SRR22062101_1.fastq.gz	Fastqsanger.gz
	SRR22062101_2.fastq.gz	Fastqsanger.gz
	SRR22062102_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 28

Similar Datasets

Lycodon rufozonatus

Project description:Lycodon rufozonatus overview

| PRJNA936214 | ENA

Lycodon rufozonatus and Lycodon rosozonatus

Project description:Lycodon rufozonatus and Lycodon rosozonatus were collected from different regions Raw sequence reads

| PRJNA1108955 | ENA

Lycodon rufozonatus strain:not collected | isolate:CLS-YC | breed:not collected | cultivar:not collected

Project description:Lycodon rufozonatus strain:not collected | isolate:CLS-YC | breed:not collected | cultivar:not collected Raw sequence reads

| PRJNA1145640 | ENA

Lycodon rufozonatus strain:not collected | isolate:CLS-BT | breed:not collected | cultivar:not collected

Project description:Lycodon rufozonatus strain:not collected | isolate:CLS-BT | breed:not collected | cultivar:not collected Raw sequence reads

| PRJNA1145641 | ENA

Lycodon aulicus

Project description:Lycodon aulicus

| PRJNA1180788 | ENA

Lycodon ruhstrati

Project description:Lycodon ruhstrati overview

| PRJNA609794 | ENA

Characteristics of Microbiota in Different Segments of the Digestive Tract of <i>Lycodon rufozonatus</i>.

Project description:The gastrointestinal tract of animals contains microbiota, forming a complex microecosystem. Gut microbes and their metabolites can regulate the development of host innate and adaptive immune systems. Animal immune systems maintain intestinal symbiotic microbiota homeostasis. However, relatively few studies have been published on reptiles, particularly snakes, and even fewer studies on different parts of the digestive tracts of these animals. Herein, we used 16S rRNA gene sequencing to investigate the microbial community composition and adaptability in the stomach and small and large intestines of Lycodon rufozonatus. Proteobacteria, Bacteroidetes, and Firmicutes were most abundant in the stomach; Fusobacteria in the small intestine; and Proteobacteria, Bacteroidetes, Fusobacteria, and Firmicutes in the large intestine. No dominant genus could be identified in the stomach; however, dominant genera were evident in the small and large intestines. The microbial diversity index was significantly higher in the stomach than in the small and large intestines. Moreover, the influence of the microbial community structure on function was clarified through function prediction. Collectively, the gut microbes in the different segments of the digestive tract revealed the unique features of the L. rufozonatus gut microbiome. Our results provide insights into the co-evolutionary relationship between reptile gut microbiota and their hosts.

| S-EPMC9952230 | biostudies-literature

Morus alba Raw protein sequence reads

Project description:Morus alba L. Raw protein sequence reads and sequence

2024-02-08 | PXD049451 |

Lycodon cathaya breed:snake

Project description:Lycodon cathaya breed:snake Genome sequencing and assembly

| PRJNA1025104 | ENA

Quantitative profiling of differentially expressed miRNAs in siCTL- and siOASL-transfected HUVECs

Project description:Purpose: The goal of this study is to compare endothelial small RNA transcriptome to identify the target of OASL under basal or stimulated conditions by utilizing miRNA-seq. Methods: Endothelial miRNA profilies of siCTL or siOASL transfected HUVECs were generated by illumina sequencing method, in duplicate. After sequencing, the raw sequence reads are filtered based on quality. The adapter sequences are also trimmed off the raw sequence reads. rRNA removed reads are sequentially aligned to reference genome (GRCh38) and miRNA prediction is performed by miRDeep2. Results: We identified known miRNA in species (miRDeep2) in the HUVECs transfected with siCTL or siOASL. The expression profile of mature miRNA is used to analyze differentially expressed miRNA(DE miRNA). Conclusions: Our study represents the first analysis of endothelial miRNA profiles affected by OASL knockdown with biologic replicates.

2022-09-06 | GSE186354 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data