Project description:The objective of this study was to decipher the metabolism expressed by Lactobacillus delbrueckii subsp. delbrueckii CIRM-BIA865 during soy juice fermentation using transcriptomics. The whole genome was sequenced, assembled and annotated. CIRM-BIA865 was then used to ferment soy juice to produce a soy-based yogurt. Samples were analysed in kinetics during fermentation, at pH values of 6.5, 6, 5 and 4.6. RNA from CIRM-BIA865 were extracted and sequenced using paired-end Illumina. Reads were mapped using Bowtie2 on previously obtained genome of CIRM-BIA865. No mismatch were allowed. Reads mapped on CDS were counted using htseqcount.List of differentially expressed (DE) genes between two successive sampling times (determined by pH) were generated using DEseq2 with a modified t-test and a p-value adjusted by Bonferoni inferior to 0.05. Fold changes expressed how many times genes were induced along the fermentations.

2023-05-13 | E-MTAB-12095 | biostudies-arrayexpress

Lactobacillus delbrueckii

Project description:Lactobacillus delbrueckii Genome sequencing and assembly

| PRJNA777018 | ENA

Lactobacillus delbrueckii

Project description:Lactobacillus delbrueckii Genome sequencing and assembly

| PRJNA880510 | ENA

Lactobacillus delbrueckii strain:AVK

Project description:Lactobacillus delbrueckii strain:AVK Genome sequencing and assembly

| PRJNA437236 | ENA

Lactobacillus delbrueckii strain:IAHAHI

Project description:Lactobacillus delbrueckii strain:IAHAHI Genome sequencing and assembly

| PRJNA559723 | ENA

Lactobacillus delbrueckii subsp. delbrueckii strain:KACC 13439

Project description:Lactobacillus delbrueckii subsp. delbrueckii KACC 13439 genome sequencing

| PRJNA289288 | ENA

Lactobacillus delbrueckii subsp. delbrueckii strain:KCTC 13731

Project description:Lactobacillus delbrueckii subsp. delbrueckii Genome sequencing and assembly

| PRJNA355324 | ENA

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