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Large-scale reporter assay to assess expression and coactivator specificity of UAS-core promoter combinations (RNA)

ABSTRACT: Large-scale reporter assay to assess expression and coactivator specificity of UAS-core promoter combinations (RNA)

PROVIDER: PRJNA897932 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR22179649_1.fastq.gz	Fastqsanger.gz
	SRR22179649_2.fastq.gz	Fastqsanger.gz
	SRR22179650_1.fastq.gz	Fastqsanger.gz
	SRR22179650_2.fastq.gz	Fastqsanger.gz
	SRR22179651_1.fastq.gz	Fastqsanger.gz

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Large-scale reporter assay to assess expression and coactivator specificity of UAS-core promoter combinations

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Large-scale reporter assay to assess expression and coactivator specificity of UAS-core promoter combinations (RNA)

Project description:Three general classes of yeast protein-coding genes are distinguished by their dependence on the transcription cofactors TFIID, SAGA and Mediator (MED) Tail, but little is known about whether this dependence is determined by the core promoter, Upstream activation sites (UAS), or other gene features. It is also unclear whether UASs can broadly activate transcription from the different promoter classes or whether efficient transcription requires matching UASs and promoters of similar gene class. Here we measure transcription and cofactor specificity for tens of thousands of UAS-core promoter combinations. We find that few UASs display strong core promoter specificity while most UASs can broadly activate promoters regardless of regulatory class. However, we find that matching UASs and promoters from the same gene class is generally important for optimal expression. We find that MED Tail and SAGA are dependent on the identity of both UAS and promoter while dependence on TFIID localizes to only the core promoter.

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Large-scale reporter assay to assess expression and coactivator specificity of UAS-core promoter combinations

Project description:This SuperSeries is composed of the SubSeries listed below.

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Transcriptomic profiling of 293T and A549 COVGT#5 reporter cell lines treated with COVGT#5 inducers and synergistic drug combinations.

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The UAS domain of UBXN7 interacts with RNF111 RING domain

Project description:In this study we performed 2 interactomes. To identify interactants of RNF111 that are dependent of the RING domain, we performed qualitative interactome comparison of HEK-293 cells transfected with GFP, GFP-RNF111-wt or GFP-RNF11-C933A mutated in its RING domain. This led to the identification of UBXN7 as a RING-dependent partner for RNF111. To identify UBXN7 UAS dependant partners, we performed quantitative interactome comparison of HEK-293 cells transfected with GFP, GFP-UBXN7-UAS.

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