Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Soil crop rotation (Tomato, lettuce, cauliflower)

ABSTRACT: Microbiota of soil crop rotation (tomato, lettuce, cauliflower)

PROVIDER: PRJNA900046 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR22387545.fastq.gz	Fastqsanger.gz
	SRR22387546.fastq.gz	Fastqsanger.gz
	SRR22387547.fastq.gz	Fastqsanger.gz
	SRR22387548.fastq.gz	Fastqsanger.gz
	SRR22387549.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 24

Similar Datasets

Crop rotation soil fungi

Project description:Fungi communities in crop rotation soils

| PRJEB66214 | ENA

Crop Rotation Fungal Community

Project description:Crop Rotation Fungal Community Raw sequence reads

| PRJNA447943 | ENA

Transcriptome profiling of lettuce plants exposed to abiotic stresses

Project description:Lettuce is one of most consumed vegetables globally. This crop is susceptible to abiotic stresses. To understand the molecular mechanisms of stress response in lettuce, global transcriptome analysis was conducted. This analysis revealed distinctive temporal expression patterns among the stress-regulated genes in lettuce plants exposed to abiotic stresses

2023-09-01 | GSE241604 | GEO

Lettuce and Tomato cultivar:Stem lettuce line PI 251246 and Tomato: Bonny Best

Project description:Lettuce and Tomato cultivar:Stem lettuce line PI 251246 and Tomato: Bonny Best Raw sequence reads

| PRJNA663323 | ENA

Expression data from Ralstonia solanacearum-inoculated tomato stem

Project description:Bacterial wilt caused by Ralstonia solanacearum is a lethal, soil-borne disease of tomato. Control of the disease with chemicals and crop rotation is insufficient, because the pathogen is particularly well adapted for surviving in the soil and rhizosphere. Therefore, cultivar resistance is the most effective means for controlling bacterial wilt, but the molecular mechanisms of resistance responses remain unclear. We used microarrays to obtain the characteristics of the gene expression changes that are induced by R. solanacearum infection in resistant cultivar LS-89 and susceptible cultivar Ponderosa.

2012-10-06 | GSE31807 | GEO

Gene expression in cauliflower curds

Project description:Description of gene expression in various types of cauliflower (including Romanesco type) Cauliflower structures develop on inflorescences from plants such as the apetala1 cauliflower double mutant in Arabidopsis thaliana or in the edible Brassica oleracea var botrytis or Romanesco. Whereas the genetic basis for the development of such structure is well understood in the model plant Arabidopsis thaliana, it is less understood in Brassica oleracea. In order to gain insight into the gene expression present in cauliflower and Romanesco curds, we performed RNA-seq analyses of mature cauliflowers and Romanesco curds and from growing cauliflowers curds. This analysis allowed to establish the nature of genes from the APETALA1 and CAULIFLOWER clade that are either mutated or expressed at very low levels in curd structures. These results shed light on the molecular nature of structures that have been selected in the domestication process.

2021-06-30 | GSE150627 | GEO

Transcriptome profiling of Cd resistance by exogenous treatment of melatonin in Italian Lettuce

Project description:This study is the first transcriptome study for Cd and melatonin treatment in lettuce, both transcriptomes and the expression profile would provide the foundation for further exploring the molecular mechanism of Cd accumulation, and develop breeding strategies aimed at decreasing Cd in crop plants.

2021-01-13 | GSE143675 | GEO

Assessment of transcriptional reprogramming of lettuce roots in response to chitin soil amendment

Project description:Chitin soil amendment is known to improve soil quality, plant growth and plant stress resilience, but the underlying mechanisms are not well understood. In this study, we monitored chitin’s effect on lettuce physiology every two weeks through an eight-week growth period, analyzed the early transcriptional reprogramming and related metabolomic changes of lettuce, in response to crab chitin treatment in peat-based potting soil. In commercial growth conditions, chitin amendment still promoted lettuce growth, increased chlorophyll content, the number of leaves and crop head weight from week six. The flavonoid content in lettuce leaves was altered as well, showing an increase at week two but a decrease from week six. Transcriptomic analysis showed that over 300 genes in lettuce root were significant differentially expressed after chitin soil treatment. Gene Ontology-term (GO) enrichment analysis revealed statistical overrepresentation of GO terms linked to photosynthesis, pigment metabolic process and phenylpropanoid metabolic process. Further analysis of the differentially expressed genes (DEGs) showed that the flavonoid pathway is mostly upregulated whereas the bifurcation of upstream phenylpropanoid pathway towards lignin biosynthesis is mostly downregulated. Metabolomic analysis revealed the upregulation of salicylic acid, chlorogenic acid, ferulic acid, and p-coumaric acid in chitin treated lettuce seedlings. These phenolic compounds mainly influence the phenylpropanoid biosynthesis pathway and may play important roles in plant defense reactions. Our results suggest that chitin soil amendments might activate induced resistance by priming lettuce plants and promote lettuce growth via transcriptional changes.

2023-03-28 | GSE224725 | GEO

Microbial communities in the rhizosphere of wheat in three crop rotation systems

Project description:Microbial communities in the rhizosphere of wheat in three crop rotation systems Metagenome

| PRJNA1108807 | ENA

Crop rotation effect on soil bacteria

Project description:We used high-throughput sequencing to study the rotation effect on soil bacteria

| PRJEB16323 | ENA