Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Streptomyces lividans strain:TK24 YA 8 DG2-P41

ABSTRACT: Streptomyces lividans TK24 YA8 DG2-P41 Genome sequencing

PROVIDER: PRJNA902010 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Similar Datasets

Streptomyces lividans strain:TK24 DG2-P41

Project description:Streptomyces lividans TK24 DG2-P41 Genome sequencing

| PRJNA694176 | ENA

CGH of Streptomyces coelicolor versus S. lividans 66 and TK24

Project description:Comparative genomic hybridization analysis of Streptomyces coelicolor A3(2) versus Streptomyces lividans 66 and Streptomyces lividans TK24 using high density 105,000 x 60-mer ink-jet in situ synthesized arrays.

2011-10-01 | E-MAXD-58 | biostudies-arrayexpress

Streptomyces lividans TK24

Project description:Streptomyces lividans TK24 Proteome

| PRJNA952857 | ENA

Streptomyces lividans TK24

Project description:Streptomyces lividans TK24 Genome sequencing

| PRJNA257077 | ENA

Differential transcriptomic analysis reveals hidden light stress response in Streptomyces lividans TK24

Project description:By the direct comparison of illuminated and non-illuminated microtiter plate cultures of Streptomyces lividans TK24 transcriptomes, the effects of differing cultivation systems by the relevance of light, a parameter that is usually out of scope during heterotrophic bioprocesses, could be addressed.

2017-05-01 | E-MTAB-5623 | biostudies-arrayexpress

Acetylome of acetyltransferase SCO0988 overexpression in S. lividans TK24

Project description:When SCO0988 was overexpressed in Streptomyces lividans TK24, it reveals the mechanism of acetyltransferase SCO0988 on regulating secondary metabolism by comparing acetylome of overexpressed strains and control strains

2023-04-14 | PXD041540 |

Streptomyces lividans

Project description:Transcriptome study of Streptomyces lividans TK24 and the derivative strain, TK24 Delta-ftsH Raw sequence reads

| PRJNA454576 | ENA

Alpha-amylase overproduction in Streptomyces lividans

Project description:The gene aml encoding alpha-amylase in Streptomyces lividans was cloned in the multicopy plasmid pIJ486, generating plasmid pAMI11. Plasmid pAMI11 and pIJ486 were propagated in S. lividans TK21 to obtain S. lividans TK21(pAMI11) and its isogenic strain S. lividans TK21(pIJ486). Transcriptional profiling of the bacterium that overproduces alpha-amylase mainly resulted in the upregulation of genes involved in the biogenesis and function of ribosomes, together with the upregulation of the genes involved in the redox processes, the ABC transporters, the central carbon, aminoacid and purine /pyrimidine metabolism. Moreover, some genes involved in oxidative stress were upregulated. The number of genes downregulated was much lower than the upregulated ones. Therefore, bacteria respond by favouring alpha-amylase overproduction that apparently does not cause damage to the cell.

2015-07-23 | GSE61448 | GEO

The Streptomyces lividans lsp mutant

Project description:The Streptomyces lividans lsp gene encodes a type II signal peptidase (Lsp) that cleaves the type II leader peptides of lipoproteins. Transcriptional profiling of the bacterium depleted of the lsp gene mainly resulted in deactivation of the sigma U regulon, as well as in downregulation of genes involved in the biogenesis and function of ribosomes and genes encoding some major secretory proteins as determined by hybridisation of commercially available S. lividans genome-wide microarrays. Almost 50% of the dowregulated genes have been described as forming part of the stringent response in streptomycetes. The gene encoding the S. lividans extracellular foldase, the lipoprotein FkpA, is equally downregulated. Therefore, the deletion of lsp from the S. livdans genome temporarily triggers a cellular stress where the stringent response is, at least, partially induced.

2014-05-22 | GSE30728 | GEO

Transcriptomic of hrdB regulatory strain in the Streptomyces lividans TK24 secdonary metabolism.

Project description:To avoid the complex switches and to reduce the limitations of different metabolic stages on the synthesis of metabolites, we designed a Streptomyces self-sustained system (StSS) that contains two functional modules, the primary metabolism module (PM) and the secondary metabolism module (SM). Here, the transcriptomic of hrdB regulatory strain in the secondary metabolism was analyzed.

2021-06-19 | GSE178472 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data