Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Mouse Human Purity mixing studies

ABSTRACT: Mouse Human Purity mixing studies

PROVIDER: PRJNA902363 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR19180490_1.fastq.gz	Fastqsanger.gz
	SRR19180490_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 2 of 2

Similar Datasets

Mouse Human Purity mixing studies

Project description:We used human + mouse cell mixtures to demonstrate the purity of PIP-seq single cell RNA-sequencing

2023-01-12 | GSE202911 | GEO

Mixing experiment

Project description:Baltic Sea mixing experiment

| PRJEB25460 | ENA

Methylation studies in human and mouse placenta

Project description:Methylation studies in human and mouse placenta

| PRJNA763596 | ENA

Induction of inverted morphology in brain organoids by vertical-mixing bioreactors

Project description:Organoid technology provides an opportunity to generate brain-like structures by recapitulating developmental steps in the manner of self-organization. We examined the vertical-mixing effect on brain organoid structures using bioreactors and established inverted brain organoids. The organoids generated by vertical mixing showed neurons that migrated from the outer periphery to the inner core of organoids, in contrast to orbital mixing. To uncover the mechanisms of the inverted structure, we investigated the direction of primary cilia, a cellular mechanosensor. Primary cilia of neural progenitors by vertical mixing were aligned in a multidirectional manner, and those by orbital mixing in a bidirectional manner. Single-cell RNA sequencing revealed that neurons of inverted brain organoids presented a GABAergic character of the ventral forebrain.

2021-10-27 | GSE184409 | GEO

Methylation studies in human cells N76

Project description:Methylation studies in human cells N76

| PRJNA763602 | ENA

MethylPurify: tumor purity deconvolution and differential methylation detection from tumor DNA methylomes

Project description:We propose a statistical algorithm MethylPurify that uses regions with bisulfite reads showing discordant methylation levels to infer tumor purity from tumor samples alone. With purity estimate, MethylPurify can identify differentially methylated regions (DMRs) from individual tumor samples without genomic variation information or prior knowledge from other datasets. In simulations with mixed bisulfite reads from cancer and normal cell lines, MethylPurify correctly inferred tumor purity and identified over 96% of the DMRs. On real patient data where tumor to normal comparison were used as golden standard, MethylPurify called DMR from tumor samples alone at over 57% sensitivity and 91% specificity.

2014-07-08 | GSE56712 | GEO

Gene-chip studies of adipogenesis-regulated microRNAs in mouse primary adipocytes and human obesity

Project description:This SuperSeries is composed of the following subset Series: GSE27912: Gene-chip studies of adipogenesis-regulated microRNAs in mouse primary adipocytes and human obesity (Exiqon) GSE27949: Gene-chip studies of adipogenesis-regulated microRNAs in mouse primary adipocytes and human obesity (Affymetrix) Refer to individual Series

2011-06-10 | E-GEOD-27951 | biostudies-arrayexpress

Multiplexed engineering and analysis of endogenous enhancer activity in single cells: Human/mouse mixing Drop-Seq experiments for K562 and MEFs

Project description:Multiplexed engineering and analysis of endogenous enhancer activity in single cells: Human/mouse mixing Drop-Seq experiments for K562 and MEFs

| PRJNA322842 | ENA

Gene-chip studies of adipogenesis-regulated microRNAs in mouse primary adipocytes and human obesity

Project description:Gene-chip studies of adipogenesis-regulated microRNAs in mouse primary adipocytes and human obesity

| PRJNA137733 | ENA

Studies on Trim71 in mouse embryonic stem cells

Project description:Studies on Trim71 in mouse embryonic stem cells

| PRJNA575274 | ENA