Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Rhizoctonia solani strain:LK4

ABSTRACT: Rhizoctonia solani strain:LK4 Genome sequencing and assembly

PROVIDER: PRJNA904246 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	SRR22425250_1.fastq.gz	Fastqsanger.gz
	SRR22425250_2.fastq.gz	Fastqsanger.gz
	SRR22436052_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 4 of 4

Similar Datasets

The pangenome analysis of the soil-borne fungal phytopathogen Rhizoctonia solani and development of a comprehensive web resource: RsolaniDB

Project description:Rhizoctonia solani Kühn is a soilborne basidiomycetous fungus that causes significant damage to many economically important crops. R. solani isolates are classified into 13 Anastomosis Groups (AGs) with interspecific subgroups having distinctive morphology, pathogenicity and wide host range. However, the genetic factors that drive the unique fungal pathology are still not well characterized due to the limited number of available annotated genomes. Therefore, we performed genome sequencing, assembly, annotation and functional analysis of 13 R. solani isolates covering 7 AGs and selected subgroups (AG1-IA, AG1-IB, AG1-IC, AG2-2IIIB, AG3-PT, AG3-TB, AG4-HG-I, AG5, AG6, and AG8). Here, we report a pangenome comparative analysis of 13 R. solani isolates covering important groups to elucidate unique and common attributes associated with each isolate, including molecular factors potentially involved in determining AG-specific host preference. Finally, we present the largest repertoire of annotated R. solani genomes, compiled as a comprehensive and user-friendly database, viz. RsolaniDB. Since 7 genomes are reported for the first time, the database stands as a valuable platform for formulating new hypotheses by hosting annotated genomes, with tools for functional enrichment, orthologs and sequence analysis, currently not available with other accessible state-of-the-art platforms hosting Rhizoctonia genome sequences.

2020-10-03 | E-MTAB-9588 | biostudies-arrayexpress

Rhizoctonia solani

Project description:Rhizoctonia solani Genome sequencing and assembly

| PRJNA1171317 | ENA

Rhizoctonia solani

Project description:Rhizoctonia solani Genome sequencing and assembly

| PRJNA917065 | ENA

Rhizoctonia solani

Project description:Rhizoctonia solani Genome sequencing and assembly

| PRJNA778030 | ENA

Rhizoctonia solani

Project description:Rhizoctonia solani Genome sequencing

| PRJNA874926 | ENA

Rhizoctonia solani strain:AG4

Project description:Rhizoctonia solani strain:AG4 Genome sequencing and assembly

| PRJNA673572 | ENA

Rhizoctonia solani

Project description:Rhizoctonia solani mitogenome Assembly

| PRJNA723546 | ENA

Differentially expressed genes during the potato-Rhizoctonia solani AG3 interaction

Project description:Differential analysis of the potato-Rhizoctonia solani AG3 interaction. Samples were extracted from R. solani inoculated potato sprouts at two time points. R. solani is one of the most prominent fungal pests of potato and therefore of great economic relevance.

2020-07-28 | E-MTAB-7137 | biostudies-arrayexpress

Rhizoctonia solani AG8 infection of wheat seedling roots

Project description:Rhizoctonia solani is a nectrotrophic fungal pathogen that causes billions of dollars of damage to agriculture worldwide and infects a broad host range including wheat, rice, potato and legumes. In this study we identify wheat genes that are differentially expressed in response to the R. solani isolate, AG8-1, using microarray technology. A significant number of wheat genes identified in this screen were involved in ROS production and redox regulation. Levels of ROS species were increased in wheat root tissue following R. solani infection as determined by NBT, DAB and titanium sulphate measurements/stainings. Pathogen/ROS related genes from R. solani were also tested for expression patterns upon wheat infection. TmpL, a R. solani gene homologous to a gene associated with ROS regulation in Alternaria brassicicola, and OAH, a R. solani gene homologous to oxaloacetate acetylhydrolase which has been shown to produce oxalic acid in Sclerotinia sclerotiorum, were highly induced in R.solani when infecting wheat. We speculate that the wheat germin-like protein (GLP) is induced to inactivate the oxalic acid that is produced by the R. solani OAH.

2015-11-04 | GSE74671 | GEO

Rhizoctonia solani strain:J227.1

Project description:Rhizoctonia solani strain:J227.1 Genome sequencing

| PRJNA1088261 | ENA