Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Bombax ceiba

ABSTRACT: Bombax ceiba Raw sequence reads

PROVIDER: PRJNA908266 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR22680000_1.fastq.gz	Fastqsanger.gz
	SRR22680000_2.fastq.gz	Fastqsanger.gz
	SRR22680001_1.fastq.gz	Fastqsanger.gz
	SRR22680001_2.fastq.gz	Fastqsanger.gz
	SRR22680002_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 96

Similar Datasets

Bombax ceiba

Project description:Bombax ceiba Raw sequence reads

| PRJNA905654 | ENA

Bombax ceiba

Project description:Bombax ceiba Raw sequence reads

| PRJNA908637 | ENA

Bombax ceiba

Project description:Bombax ceiba Assembly

| PRJNA908649 | ENA

Bombax ceiba

Project description:Bombax ceiba overview

| PRJNA483831 | ENA

Bombax ceiba

Project description:Single-cell analysis for B. ceiba fibre fiber initiation

| PRJNA1058188 | ENA

Ceiba pentandra

Project description:Ceiba pentandra overview

| PRJNA1059676 | ENA

The complete mitochondrial genome of <i>Bombax ceiba</i>.

Project description:Bombax ceiba is a beautiful and deciduous tree with important economic and ecological values. Here, we sequenced the intact mitochondrial genome (mitogenome) of B. ceiba on the PacBio sequencing platform (Pacific Biosciences, Menlo Park, CA). The mitogenome is 594,390 bp and is comprised of 35 protein-coding genes, two rRNA genes, and 25 tRNA genes. The phylogeny analysis suggested that B. ceiba was closely clustered with the genus Gossypium.

| S-EPMC7800617 | biostudies-literature

Ceiba pentandra

Project description:Ceiba pentandra Genome sequencing and assembly

| PRJNA908642 | ENA

Ceiba aesculifolia

Project description:Ceiba aesculifolia Transcriptome or Gene expression

| PRJNA561202 | ENA

Development and characterization of EST-SSR markers in Bombax ceiba (Malvaceae).

Project description:PREMISE OF THE STUDY:Bombax ceiba (Malvaceae), commonly known as silk cotton tree, is a multipurpose tree species of tropical forests. Novel expressed sequence tag-simple sequence repeat (EST-SSR) markers were developed and characterized for the species using transcriptome analysis. METHODS AND RESULTS:A total of 33 new EST-SSR markers were developed for B. ceiba, of which 13 showed polymorphisms across the 24 individuals from four distant populations tested in the study. The results showed that the number of alleles per polymorphic locus ranged from two to four, and the expected heterozygosity and observed heterozygosity per locus varied from 0.043 to 0.654 and from 0 to 0.609, respectively. CONCLUSIONS:These newly developed EST-SSR markers can be used in phylogeographic and population genetic studies to investigate the origin of B. ceiba populations. Furthermore, these EST-SSR markers could also greatly promote the development of molecular breeding studies pertaining to silk cotton tree.

| S-EPMC4406838 | biostudies-literature

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data