Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Sitobion miscanthi

ABSTRACT: Sitobion miscanthi Raw sequence reads

PROVIDER: PRJNA908645 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR22540908_1.fastq.gz	Fastqsanger.gz
	SRR22540908_2.fastq.gz	Fastqsanger.gz
	SRR22540909_1.fastq.gz	Fastqsanger.gz
	SRR22540909_2.fastq.gz	Fastqsanger.gz
	SRR22540910_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 12

Similar Datasets

Sitobion miscanthi

Project description:Sitobion miscanthi overview

| PRJNA800553 | ENA

Sitobion miscanthi

Project description:Sitobion miscanthi Genome sequencing and assembly

| PRJNA532495 | ENA

Sitobion miscanthi

Project description:NGS of 16S rRNA: microbial communities of Sitobion miscanthi

| PRJNA800177 | ENA

Population genetics of Sitobion avenae and Sitobion miscanthi

Project description:Contrasting population evolution of Sitobion avenae and Sitobion miscanthi in England and China

| PRJEB36151 | ENA

Buchnera aphidicola (Sitobion miscanthi) strain:Sm

Project description:Buchnera aphidicola (Sitobion miscanthi) strain:Sm Genome sequencing and assembly

| PRJNA769755 | ENA

Sitobion avenae

Project description:Sitobion avenae

| PRJNA380081 | ENA

Sitobion avenae

Project description:Sitobion avenae overview

| PRJNA186713 | ENA

Sitobion avenae

Project description:Transcriptome of Sitobion avenae

| PRJNA517293 | ENA

Sitobion avenae

Project description:Sitobion avenae Genome sequencing

| PRJNA1039626 | ENA

A chromosome-level draft genome of the grain aphid Sitobion miscanthi.

Project description:BackgroundSitobion miscanthi is an ideal model for studying host plant specificity, parthenogenesis-based phenotypic plasticity, and interactions between insects and other species of various trophic levels, such as viruses, bacteria, plants, and natural enemies. However, the genome information for this species has not yet to be sequenced and published. Here, we analyzed the entire genome of a parthenogenetic female aphid colony using Pacific Biosciences long-read sequencing and Hi-C data to generate chromosome-length scaffolds and a highly contiguous genome assembly.ResultsThe final draft genome assembly from 33.88 Gb of raw data was ∼397.90 Mb in size, with a 2.05 Mb contig N50. Nine chromosomes were further assembled based on Hi-C data to a 377.19 Mb final size with a 36.26 Mb scaffold N50. The identified repeat sequences accounted for 26.41% of the genome, and 16,006 protein-coding genes were annotated. According to the phylogenetic analysis, S. miscanthi is closely related to Acyrthosiphon pisum, with S. miscanthi diverging from their common ancestor ∼25.0-44.9 million years ago.ConclusionsWe generated a high-quality draft of the S. miscanthi genome. This genome assembly should help promote research on the lifestyle and feeding specificity of aphids and their interactions with each other and species at other trophic levels. It can serve as a resource for accelerating genome-assisted improvements in insecticide-resistant management and environmentally safe aphid management.

| S-EPMC6701489 | biostudies-literature

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data