Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Vairimorpha necatrix isolate:Illinois isolate

ABSTRACT: Vairimorpha necatrix genome sequencing, assembly and annotation

PROVIDER: PRJNA909071 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	SRR24979570_1.fastq.gz	Fastqsanger.gz
	SRR24979570_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 3 of 3

Similar Datasets

Vairimorpha necatrix

Project description:Vairimorpha necatrix overview

| PRJNA1118406 | ENA

Vairimorpha ceranae

Project description:Vairimorpha ceranae Genome sequencing and assembly

| PRJNA209464 | ENA

Rosellinia necatrix RNA-seq infecting avocado roots

Project description:White root rot disease caused by Rosellinia necatrix is one of the most important pathogens affecting avocado productivity in temperate, tropical and subtropical climates. Control of this disease is complex and nowadays, lies in the use of physical and chemical methods, although none have proven to be fully effective. Detailed understanding of the molecular mechanisms underlying white root rot disease has the potential of aiding future developments in disease resistance and management. In this regard, this study used RNAseq technology to compare the transcriptomic profiles of R. necatrix during infection of susceptible avocado `Dusa´ roots with that obtained from the fungus cultured in rich medium. The transcriptomes from three biological replicates of R. necatrix colonizing avocado roots (RC) and R. necatrix growing on potato dextrose agar media (PDA) were obtained using Illumina sequencing. A total of 12,104 transcripts were obtained, among which 1937 were differentially expressed genes (DEG), 137 exclusively expressed in RC and 160 and PDA. Interestingly genes involved in the production of fungal toxins, detoxification of toxic compounds, hormone biosynthesis, gene silencing and plant cell wall degradation were overexpressed during the infection process. In addition, 23 out of the 137 contigs, only expressed during R. necatrix growth on avocado roots, were predicted as candidate effector proteins (CEP) by the CSIRO tool with a probability above 60%. The PHI (Pathogen Host Interaction) database revealed that 11 R. necatrix CEP were previously annotated as effectors genes proven experimentally via pathogen-host interaction.

2020-01-08 | GSE134243 | GEO

Vairimorpha ceranae strain:BRL

Project description:Vairimorpha ceranae strain:BRL Genome sequencing and assembly

| PRJNA514060 | ENA

Vairimorpha bombi strain:VR1

Project description:Vairimorpha bombi strain:VR1 Genome sequencing and assembly

| PRJNA945438 | ENA

Vairimorpha bombi

Project description:Vairimorpha bombi overview

| PRJNA1029260 | ENA

Rosellinia necatrix strain:CMW50482

Project description:Rosellinia necatrix strain:CMW50482 Genome sequencing and assembly