Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Yangtze River archaeal 16S rRNA gene amplicon sequencing

ABSTRACT: Yangtze River archaeal 16S rRNA gene amplicon sequencing Raw sequence reads

PROVIDER: PRJNA911602 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Similar Datasets

Yangtze River bacteria

Project description:Yangtze River bacteria Raw sequence reads

| PRJNA837026 | ENA

16S rRNA amplicon ------river

Project description:Longitudinal changes of microbial communities in water and sediments along Xiangjiang River

| PRJNA562110 | ENA

High-throughput 16S rRNA amplicon pyrosequencing of contaminated aquifer sediment

Project description:Contaminated aquifer (Dusseldorf-Flinger, Germany) templates extracted from 5 sediment depths ranging between 6.4 and 8.4 m below ground and over 3 years of sampling were amplified for amplicon pyrosequencing using the primers Ba27f (5’-aga gtt tga tcm tgg ctc ag-3’) and Ba519r (5’- tat tac cgc ggc kgc tg-3’), extended as amplicon fusion primers with respective primer A or B adapters, key sequence and multiplex identifiers (MID) as recommended by 454/Roche. Amplicons were purified and pooled as specified by the manufacturer. Emulsion PCR (emPCR), purification of DNA-enriched beads and sequencing run were performed following protocols and using a 2nd generation pyrosequencer (454 GS FLX Titanium, Roche) as recommended by the developer. Quality filtering of the pyrosequencing reads was performed using the automatic amplicon pipeline of the GS Run Processor (Roche), with a slight modification concerning the valley filter (vfScanAllFlows false instead of TiOnly) to extract the sequences. Demultiplexed raw reads were furhter trimmed for quality and lenght (>250 bp).

2012-11-11 | GSE25345 | GEO

High-throughput 16S rRNA amplicon pyrosequencing of contaminated aquifer sediment

2012-11-11 | E-GEOD-25345 | biostudies-arrayexpress

Yangtze River Microbiome

Project description:Microbial Communities in the Middle and Lower Reaches of the Yangtze River

| PRJEB60356 | ENA

Paddy soil archaeal 16S rRNA

Project description:Paddy soil archaeal 16S rRNA Genome sequencing and assembly

| PRJNA450890 | ENA

16S rRNA amplicon sequencing

Project description:16S rRNA amplicon sequencing Raw sequence reads

| PRJNA434504 | ENA

16S rRNA Amplicon Sequencing of Urban Prokaryotic Communities in the South Bronx River Estuary.

Project description:Biodiversity monitoring is an essential component of restoration efforts. We sequenced 16S rRNA gene amplicons from sediments and waters of Hunts Point Riverside Park and Soundview Park, located in a historically degraded but recovering urban estuary in New York. In total, 16,165 unique amplicon sequence variants were recovered, and Proteobacteria was the dominant phylum.

| S-EPMC7256250 | biostudies-literature

Anaerobic digester 16S rRNA amplicon

Project description:Anaerobic digesters' 16S rRNA amplicon Metagenome

| PRJNA706855 | ENA

Anaerobic fermenter 16S rRNA amplicon

Project description:Anaerobic acidogenic fermenters' 16S rRNA amplicon metagenome

| PRJNA706854 | ENA