Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Rectal microbiota sequence read archive

PROVIDER: PRJNA913394 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR22825156_1.fastq.gz	Fastqsanger.gz
	SRR22825156_2.fastq.gz	Fastqsanger.gz
	SRR22825157_1.fastq.gz	Fastqsanger.gz
	SRR22825157_2.fastq.gz	Fastqsanger.gz
	SRR22825158_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 16

Similar Datasets

Project description:Sequence Read Archive of 46

| PRJNA482048 | ENA

Project description:Sequence Read Archive of the Tubakiaceae

| PRJNA1108156 | ENA

Project description:Puffer fishes gut bacteria sequence read archive

| PRJNA630073 | ENA

Project description:The Sequence Read Archive (SRA) of Pleione maculata

| PRJNA726024 | ENA

Deep sequencing of the Caenorhabditis elegans transcriptome using RNA isolated from various developmental stages under various experimental conditions RW0001

Project description:The goal of this study, started as a part of the modENCODE project, is to detect and characterize previously unannotated transcripts of the C. elegans genome. This dataset has been imported from the Sequence Read Archive and curated by the WormBase and ArrayExpress teams.

2010-02-26 | E-MTAB-2683 | biostudies-arrayexpress

Chromosomal microarray analysis for validation of the NGS-based CNV detection results in clinical samples

Project description:In order to evaluate the performance of CNV detection in next-generation sequencing platform in varied sample types, we employed chromosomal microarray analysis (CMA) for validation of the samples with NGS-based detection results (NCBI Sequence Read Archive with accession number SRA296708). Besides array Comparative Genomics Hybridization (aCGH, Agilent) , we used a commerical SNP-array (Illumina) including early abortus, induced termination, prenatal samples and postnatal samples. CMA results were compared with NGS-based detection results. 100% consistency was obtained between NGS-based approach and CMA in pathogenic or likely pathogenic CNVs detection.

2015-10-01 | GSE73190 | GEO

Giant marker chromosomes in cancer

Project description:To unravel the fine architecture of neocentromeres found in three well-differentiated liposarcoma (WDLPS) cell lines as patchworks of multiple short amplified sequences, disclosing a much more higher complexity than previously reported. Next generation sequencing data (WGS, RNA-seq, CENP-A/ChIP-seq) are available at the Sequence Read Archive (BioProject ID: PRJNA378952).

2017-12-22 | E-MTAB-5625 | biostudies-arrayexpress

aCGH for CNV detection in clinical samples

Project description:In order to evaluate the performance of CNV detection in next-generation sequencing platform in varied sample types, we employed chromosomal microarray analysis (CMA) for validation of the samples with NGS-based detection results (NCBI Sequence Read Archive with accession number SRA296708). Besides snp-array, we used a customized array Comparative Genomics Hybridization (aCGH, Agilent) approach for a cohort of clinical samples including early abortus, induced termination, prenatal samples and postnatal samples. CMA results were compared with NGS-based detection results. 100% consistency was obtained between NGS-based approach and CMA in pathogenic or likely pathogenic CNVs detection.

2015-10-01 | GSE72891 | GEO

CpG island mediated linear and spatial gene partitioning (ChIP-seq)

Project description:In order to elucidate the general rules for gene localization and regulation mediated by CpG islands, we reanalyzed published ChIP-seq data of CXXC domain, H3K9me3, KDM2A, SUV39H1, ATF4, MYBL1, MYOD1, SPI1, and CTCF. Raw data were downloaded from Sequence Read Archive (SRA) in National Center for Biotechnology Information (NCBI) database. FASTQ files were extracted with the SRA Toolkit version 2.5.5 and aligned using Bowtie 2.2.5 onto the mouse and human genome (mm9 and hg19, respectively). For the identification of factor binding sites, model-based analysis for ChIP-seq peak caller (MACS 1.4.2) was used with a p-value cutoff of 1e-5.

2018-02-15 | GSE80791 | GEO

Project description:The Sequence Read Archive of Nostolachma jenkinsii (Hook.f.) Deb & J.Lahiri

| PRJNA1012112 | ENA