Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Anammox bacteria in sediment

ABSTRACT: Anammox bacteria in sediment Raw sequence reads

PROVIDER: PRJNA914860 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR22859449_1.fastq.gz	Fastqsanger.gz
	SRR22859449_2.fastq.gz	Fastqsanger.gz
	SRR22859450_1.fastq.gz	Fastqsanger.gz
	SRR22859450_2.fastq.gz	Fastqsanger.gz
	SRR22859451_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 18

Similar Datasets

anammox bacteria

Project description:granular anammox bacteria Raw sequence reads

| PRJNA491836 | ENA

river sediment bacteria

Project description:river sediment bacteria Raw sequence reads

| PRJNA790017 | ENA

Anammox

Project description:Anammox Raw sequence reads

| PRJNA1044919 | ENA

anammox

Project description:anammox Raw sequence reads

| PRJNA431865 | ENA

anammox

Project description:anammox Raw sequence reads

| PRJNA485254 | ENA

Anammox

Project description:Anammox Raw sequence reads

| PRJNA1044921 | ENA

anammox

Project description:anammox Raw sequence reads

| PRJNA554404 | ENA

Effects of Fe(II) on anammox community activity and functional genes expression

Project description:Four Fe(II) concentrations (0.03, 0.09, 0.12 & 0.75 mM) were tested to investigate the stimulation and inhibition effects of ferrous iron on anammox bacterial activity. RNAs were extracted from the cultures, and the synthesized cDNAs by reverse transcription were used to carry out GeoChip analysis, by which the functional communities and expression level differences in functional genes under different Fe(II) concentrations conditions were obtained, and the response of anammox bacteria to Fe(II) stimulation and inhibition are speculated.

2020-08-28 | GSE120704 | GEO

bacteria in intertidal sediment

Project description:bacteria in intertidal sediment Raw sequence reads

| PRJNA448203 | ENA

High-throughput 16S rRNA amplicon pyrosequencing of contaminated aquifer sediment

Project description:Contaminated aquifer (Dusseldorf-Flinger, Germany) templates extracted from 5 sediment depths ranging between 6.4 and 8.4 m below ground and over 3 years of sampling were amplified for amplicon pyrosequencing using the primers Ba27f (5’-aga gtt tga tcm tgg ctc ag-3’) and Ba519r (5’- tat tac cgc ggc kgc tg-3’), extended as amplicon fusion primers with respective primer A or B adapters, key sequence and multiplex identifiers (MID) as recommended by 454/Roche. Amplicons were purified and pooled as specified by the manufacturer. Emulsion PCR (emPCR), purification of DNA-enriched beads and sequencing run were performed following protocols and using a 2nd generation pyrosequencer (454 GS FLX Titanium, Roche) as recommended by the developer. Quality filtering of the pyrosequencing reads was performed using the automatic amplicon pipeline of the GS Run Processor (Roche), with a slight modification concerning the valley filter (vfScanAllFlows false instead of TiOnly) to extract the sequences. Demultiplexed raw reads were furhter trimmed for quality and lenght (>250 bp).

2012-11-11 | GSE25345 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data