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Ago2-CLASH reveals a wide repertoire of small RNA mediated regulation [CLASH-seq]

ABSTRACT: Ago2-CLASH reveals a wide repertoire of small RNA mediated regulation [CLASH-seq]

PROVIDER: PRJNA915020 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR22863835.fastq.gz	Fastqsanger.gz
	SRR22863836.fastq.gz	Fastqsanger.gz
	SRR22863837.fastq.gz	Fastqsanger.gz

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Ago2-CLASH reveals a wide repertoire of small RNA mediated regulation [CLASH-seq]

Project description:Here we present the CLASH analysis of AGO2 in HEK293 cells to address the small RNA repertoire and uncover their physiological targets. We developed an optimized bioinformatics approach of chimeric read identification to detect chimeras of high confidence. We report thousands of Ago2 target sites driven by microRNAs, but also a substantial number of Ago2 ‘drivers’ derived from fragments of other small RNAs such as tRNAs, snoRNAs, rRNAs and others. Target validation of several miRNAs delivered by 3’ Quantseq RNA-Seq.

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Mapping targets for small nucleolar RNAs in human cells [CLASH/FLASH]

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