Phedimus latiovalifolius
Ontology highlight
ABSTRACT:
PROVIDER: PRJNA917421 | ENA |
REPOSITORIES: ENA
Dataset's files
| Action | DRS | |||
|---|---|---|---|---|
| SRR21733744_1.fastq.gz | Fastqsanger.gz | |||
| SRR21733744_2.fastq.gz | Fastqsanger.gz |
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Project description:Phedimus aizoon L. is a drought-resistant Chinese herbal medicine and vegetable. However, its drought tolerant limit and the mechanism of drought tolerance are unknown, which restricts the promotion of water-saving cultivation of Phedimus aizoon L. in arid areas. To solve the above problem, we carried out a 30-day-long drought stress experiment in pots that presented different soil water contents and were divided into four groups: control check, 75-80% of the maximum water-holding capacity (MWHC); mild drought, 55-60%; moderate drought, 40-45%; and severe drought, 20-25%. The dynamic changes in both plant physiological indexes from 10 to 30 days and leaf anatomical structure on the 30th day of stress were recorded. The results show that Phedimus aizoon L. grew normally under mild drought stress for 30 days, but the growth of the plants became inhibited after 20 days of severe drought and after 30 days of moderate drought. At the same time, Phedimus aizoon L. physiologically responded to cope with drought stress: the growth of the root system accelerated, the waxy layer of the leaves thickened, and the dark reactions of the plants transformed from those of the C3 cycle to CAM. The activity of antioxidant enzymes (SOD, POD and CAT) continuously increased to alleviate the damage caused by drought stress. To ensure the relative stability of the osmotic potential, the contents of osmoregulatory substances such as proline, soluble sugars, soluble protein and trehalose increased correspondingly. Although Phedimus aizoon L. has strong drought stress resistance, our experimental results show that the soil available water content should not be less than 27% during cultivation.
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Project description:The complete chloroplast genome sequence of Phedimus kamtschaticus, which commonly occurs in northeastern Asia was determined. The genome size was 151,652 bp, composed of one pair of inverted repeats (IRs) of 25,977 bp, which were separated by one large single-copy (LSC; 83,010 bp) and one small single-copy (SSC; 16,688 bp) region. The chloroplast genome contained 132 genes, including 88 protein-coding genes, 36 tRNA genes, and 8 rRNA genes. The overall GC content was 37.8%. Phylogenetic analysis of the complete chloroplast genome suggested that P. kamtschaticus was most closely related to Ulleung Island insular endemic P. takesimensis.
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Project description:The change in appearance during the seasonal transitions in ornamental greening plants is an important characteristic. In particular, the early onset of green leaf color is a desirable trait for a cultivar. In this study, we established a method for phenotyping leaf color change by multispectral imaging and performed genetic analysis based on the phenotypes to clarify the potential of the approach in breeding greening plants. We performed multispectral phenotyping and quantitative trait locus (QTL) analysis of an F1 population derived from 2 parental lines of Phedimus takesimensis, known to be a drought and heat-tolerant rooftop plant species. The imaging was conducted in April of 2019 and 2020 when dormancy breakage occurs and growth extension begins. Principal component analysis of 9 different wavelength values showed a high contribution from the first principal component (PC1), which captured variation in the visible light range. The high interannual correlation in PC1 and in the intensity of visible light indicated that the multispectral phenotyping captured genetic variation in the color of leaves. We also performed restriction site-associated DNA sequencing and obtained the first genetic linkage map of Phedimus spp. QTL analysis revealed 2 QTLs related to early dormancy breakage. Based on the genotypes of the markers underlying these 2 QTLs, the F1 phenotypes with early (late) dormancy break, green (red or brown) leaves, and a high (low) degree of vegetative growth were classified. The results suggest the potential of multispectral phenotyping in the genetic dissection of seasonal leaf color changes in greening plants.
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Project description:It is very important to confirm and understand the genetic background of cultivated plants used in multiple applications. The genetic background is the history of crossing between maternal and paternal plants to generate a cultivated plant. If the plant in question was generated from a simple origin and not complicated crossing, we can easily confirm the history using a phylogenetic tree based on molecular data. This study was conducted to trace the origin of "Tottori Fujita 1gou" and "Tottori Fujita 2gou", which are registered as cultivars originating from Phedimus kamtschaticus. To investigate the phylogenetic position of these cultivars, the backbone tree of the genus Phedimus needed to be further constructed because it retains inarticulate phylogenetic relationships among the wild species. We performed molecular phylogenetic analysis for P. kamtschaticus, Phedimus takesimensis, Phedimus aizoon, and Phedimus middendorffianus, which are assumed as the species of origin for "Tottori Fujita 1gou" and "Tottori Fujita 2gou". The molecular phylogenetic tree based on the internal transcribed spacer (ITS) and psbA-trnH sequences showed the monophyly of the genus Phedimus, with P. takesimensis forming a single clade. However, P. kamtschaticus and P. aizoon were scattered in the tree. It was verified that "Tottori Fujita 1gou" and "Tottori Fujita 2gou" were embedded in a clade with P. takesimensis and not P. kamtschaticus. Therefore, origination from P. takesimensis was strongly supported. Based on these results, molecular phylogenetic analysis is suggested as a powerful tool for clearly tracing the origin of cultivated plants.
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