Project description:Offspring predation is one of the greatest obstacles to an organism's reproductive success, but parents vary in the strength of their response to potential predators. One explanation for this variable investment is that defending current offspring has the potential to lower future reproductive success if the predator is also capable of injuring or killing the parent. Northern house wrens (Troglodytes aedon) are cavity-nesting songbirds that defend against multiple species of nest predators including small mammals, birds of prey, and snakes. Here, we used three different predator decoys: two nest predators-an eastern chipmunk (Tamias striatus) and an eastern ratsnake (Pantherophis alleghaniensis)-as well as a predator of both offspring and adults-a juvenile Cooper's hawk (Accipiter cooperi)-to elicit nest defense and test whether females use risk assessment to modulate their antipredator behavior. We found that antipredator behaviors were not significantly different between the two nest predators, which posed a high risk to the nestlings, but lower risk to the parents, as neither species frequently captures adult wrens outside the nest box. However, female wrens never dove at or attacked the Cooper's hawk, while they frequently attacked both the snake and chipmunk decoys. Neighboring house wrens from adjacent territories were also less likely to respond to the hawk, but more heterospecifics mobbed the hawk than the snake decoy. Collectively, these results show that risk assessment and the strength of the antipredator response varies substantially both within and among species. Female house wrens exhibit plasticity in their nest defense behavior, and they respond to different types of predators in a way that could maximize lifetime fitness while risking the loss of their current offspring.
Project description:This study aims to investigate the DNA methylation patterns at transcription factor binding regions and their evolutionary conservation with respect to binding activity divergence. We combined newly generated bisulfite-sequencing experiments in livers of five mammals (human, macaque, mouse, rat and dog) and matched publicly available ChIP-sequencing data for five transcription factors (CEBPA, HNF4a, CTCF, ONECUT1 and FOXA1). To study the chromatin contexts of TF binding subjected to distinct evolutionary pressures, we integrated publicly available active promoter, active enhancer and primed enhancer calls determined by profiling genome wide patterns of H3K27ac, H3K4me3 and H3K4me1.
Project description:Whole genome sequencing of the Arabidopsis thaliana dot5-1 transposon insertion line described in Petricka et al 2008 The Plant Journal 56(2): 251-263.
Project description:The analysis identifies differentially occupied genomic regions of H2Bub1, H3K79me3, and H3K27ac by RNF40 silencing in HCC1806 cells
Project description:This study aims to investigate the interactions of mutagenic lesions from diethylnitrosamine (DEN) treatment of mouse livers with such processes as replication, transcription, and interaction of DNA with proteins. Liver samples of 15-day old (P15) untreated C3H/HeOuJ mice were isolated and flash-frozen. ChIP-seq was performed to identify CTCF binding sites in livers of ten pooled individuals. The experiment was done with five biological replicates with a matched input library.
