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Citrus glauca strain:CRC3463 | isolate:PI 539717 | cultivar:Australian desert lime

ABSTRACT: Citrus glauca strain:CRC3463 | isolate:PI 539717 | cultivar:Australian desert lime Genome sequencing and assembly

PROVIDER: PRJNA924093 | ENA |

REPOSITORIES: ENA

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Citrus glauca strain:CRC3463 | isolate:PI 539717 | cultivar:Australian desert lime

Project description:Citrus glauca strain:CRC3463 | isolate:PI 539717 | cultivar:Australian desert lime Genome sequencing and assembly

| PRJNA924091 | ENA

Citrus glauca strain:CRC3463 | isolate:PI 539717 | cultivar:Australian desert lime

Project description:Citrus glauca strain:CRC3463 | isolate:PI 539717 | cultivar:Australian desert lime Genome sequencing and assembly

| PRJNA924092 | ENA

Citrus glauca isolate:PI 539717

Project description:Citrus glauca alternate haplotype genome assembly

| PRJNA924121 | ENA

Citrus glauca isolate:PI 539717

Project description:Citrus glauca primary haplotype genome assembly

| PRJNA924119 | ENA

Citrus australasica strain:CRC 3672 | isolate:PI 312872 | cultivar:Australian finger lime

Project description:Citrus australasica strain:CRC 3672 | isolate:PI 312872 | cultivar:Australian finger lime primary haplotype genome assembly

| PRJNA918431 | ENA

Citrus australasica strain:CRC 3672 | isolate:PI 312872 | cultivar:Australian finger lime

Project description:Citrus australasica strain:CRC 3672 | isolate:PI 312872 | cultivar:Australian finger lime alternate haplotype genome assembly

| PRJNA918673 | ENA

Phytoplasma-responsive small RNAs in Mexican lime trees

Project description:Background: Witches’ broom disease of Mexican lime (Citrus aurantifolia L.), which is caused by the phytoplasma “Candidatus Phytoplasma aurantifolia”, is a devastating disease that results in significant economic losses. Plants adapt to abiotic stresses by regulating gene expression at the transcriptional and post-transcriptional levels. MicroRNAs (miRNAs) are a recently identified family of molecules that regulate plant responses to environmental stresses through post-transcriptional gene silencing. Methods: Using a high-throughput approach to sequence small RNAs, we compared the expression profiles of miRNAs in healthy Mexican lime trees and in plants infected with “Ca. Phytoplasma aurantifolia”. Results: Our results demonstrated the involvement of different miRNAs in the response of Mexican lime trees to infection by “Ca. Phytoplasma aurantifolia”. We identified miRNA families that are expressed differentially upon infection with phytoplasmas. Most of the miRNAs had variants with small sequence variations (isomiRs), which are expressed differentially in response to pathogen infection. Conclusions: It is likely that the miRNAs that are expressed differentially in healthy and phytoplasma-infected Mexican lime trees are involved in coordinating the regulation of hormonal, nutritional, and stress signalling pathways, and the complex interactions between them. Future research to elucidate the roles of these miRNAs should improve our understanding of the level of diversity of specific plant responses to phytoplasmas.

2013-03-09 | GSE44279 | GEO

The application of LIMe-ID to study the impact of PRC2 perturbations on lamina assoication.

Project description:We developed and performed LIMe-ID to simultaneously measure lamina association and DNA methylation in one experimental workflow. We then conducted LIMe-ID following perturbations of PRC2 to better understand the influence of H3K27me3 on lamina association.

2022-06-17 | GSE198615 | GEO

Transcript profiling of seven tissues in P. glauca

Project description:The goal is to identify tissue specific patterns of expression in Picea glauca seedlings

2015-01-21 | GSE60277 | GEO

Phytoplasma-responsive small RNAs in Mexican lime trees

Project description:Background: WitchesM-bM-^@M-^Y broom disease of Mexican lime (Citrus aurantifolia L.), which is caused by the phytoplasma M-bM-^@M-^\Candidatus Phytoplasma aurantifoliaM-bM-^@M-^], is a devastating disease that results in significant economic losses. Plants adapt to abiotic stresses by regulating gene expression at the transcriptional and post-transcriptional levels. MicroRNAs (miRNAs) are a recently identified family of molecules that regulate plant responses to environmental stresses through post-transcriptional gene silencing. Methods: Using a high-throughput approach to sequence small RNAs, we compared the expression profiles of miRNAs in healthy Mexican lime trees and in plants infected with M-bM-^@M-^\Ca. Phytoplasma aurantifoliaM-bM-^@M-^]. Results: Our results demonstrated the involvement of different miRNAs in the response of Mexican lime trees to infection by M-bM-^@M-^\Ca. Phytoplasma aurantifoliaM-bM-^@M-^]. We identified miRNA families that are expressed differentially upon infection with phytoplasmas. Most of the miRNAs had variants with small sequence variations (isomiRs), which are expressed differentially in response to pathogen infection. Conclusions: It is likely that the miRNAs that are expressed differentially in healthy and phytoplasma-infected Mexican lime trees are involved in coordinating the regulation of hormonal, nutritional, and stress signalling pathways, and the complex interactions between them. Future research to elucidate the roles of these miRNAs should improve our understanding of the level of diversity of specific plant responses to phytoplasmas. Small mRNA profiles of healthy (H) and Phytoplasma-infected Mexican lime trees were generated by deep sequencing, six replicate, using Illumina Hiseq2000

2013-03-09 | E-GEOD-44279 | biostudies-arrayexpress

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