Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Petroleum hydrocarbon-contaminated ecopiles

ABSTRACT: Petroleum hydrocarbon-contaminated ecopiles Raw sequence reads

PROVIDER: PRJNA925022 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR23193700_1.fastq.gz	Fastqsanger.gz
	SRR23193700_2.fastq.gz	Fastqsanger.gz
	SRR23193701_1.fastq.gz	Fastqsanger.gz
	SRR23193701_2.fastq.gz	Fastqsanger.gz
	SRR23193702_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 216

Similar Datasets

Petroleum contaminated soil

Project description:Petroleum contaminated soil Raw sequence reads

| PRJNA796129 | ENA

petroleum contaminated soil

Project description:petroleum contaminated soil Raw sequence reads

| PRJNA946907 | ENA

Petroleum-Contaminated Soil

Project description:Petroleum-Contaminated Soil Metagenomic assembly

| PRJNA722157 | ENA

Petroleum contaminated soils

Project description:Petroleum contaminated soils Metagenomic assembly

| PRJNA721029 | ENA

Petroleum hydrocarbon-contaminated soil

Project description:Metagenomics and metatranscriptomics of bacterial consortium isolated from hydrocarbon polluted soils

| PRJNA1064703 | ENA

Fermentative Spirochaetes drive nutrient cycling by a subsurface microbial loop in hydrocarbon-contaminated habitats

Project description:Members of the bacterial phylum Spirochaetes are primarily studied for their commensal and pathogenic roles in animal hosts. However, Spirochaetes are also frequently detected in anoxic hydrocarbon-contaminated environments but their ecological role in such ecosystems has so far remained unclear. Here we provide a functional trait to these frequently detected organisms with an example of a sulfate-reducing, naphthalene-degrading enrichment culture consisting of a sulfate-reducing deltaproteobacterium Desulfobacterium naphthalenivorans and a novel spirochete Rectinema cohabitans. Using a combination of genomic, proteomic, and physiological studies we show that R. cohabitans grows by fermentation of organic compounds derived from biomass from dead cells (necromass). It recycles the derived electrons in the form of H2 to the sulfate-reducing D. naphthalenivorans, thereby supporting naphthalene degradation and forming a simple microbial loop. We provide metagenomic evidence that equivalent associations between Spirochaetes and hydrocarbon-degrading microorganisms are of general importance in hydrocarbon- and organohalide-contaminated ecosystems. We propose that environmental Spirochaetes form a critical component of a microbial loop central to nutrient cycling in subsurface environments. This emphasizes the importance of necromass and H2-cycling in highly toxic contaminated subsurface habitats such as hydrocarbon-polluted aquifers.

2018-05-17 | PXD005624 | Pride

Petroleum hydrocarbons contaminated soil metagenome (VLK)

Project description:Petroleum hydrocarbons contaminated soil metagenome (VLK)

| PRJNA715307 | ENA

Petroleum hydrocarbons contaminated soil metagenome (VLN)

Project description:Petroleum hydrocarbons contaminated soil metagenome (VLN)

| PRJNA723445 | ENA

Petroleum hydrocarbons contaminated soil metagenome (VDN)

Project description:Petroleum hydrocarbons contaminated soil metagenome (VDN) Metagenome

| PRJNA714810 | ENA

Hydrocarbon metagenome

Project description:Hydrocarbon metagenome Raw sequence reads