Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: ddRAD-seq generated genomic sequence dataset of Central and Southeast European Turkey oak (Quercus cerris L.) individuals

PROVIDER: PRJNA927246 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR23216100_1.fastq.gz	Fastqsanger.gz
	SRR23216100_2.fastq.gz	Fastqsanger.gz
	SRR23216101_1.fastq.gz	Fastqsanger.gz
	SRR23216101_2.fastq.gz	Fastqsanger.gz
	SRR23216102_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 176

Similar Datasets

dhQueCerr

Project description:Quercus cerris (Turkey oak)

| PRJEB67429 | ENA

dhQueCerr2

Project description:Quercus cerris (Turkey oak) genome assembly, dhQueCerr2

| PRJEB69237 | ENA

dhQueCerr

Project description:Quercus cerris (Turkey oak), genomic and transcriptomic data

| PRJEB67428 | ENA

dhQueCerr2 alternate haplotype

Project description:Quercus cerris (Turkey oak) genome assembly, dhQueCerr2, alternate haplotype

| PRJEB69236 | ENA

Quercus cerris

Project description:Quercus cerris overview

| PRJNA1039944 | ENA

The Holm oak (Quercus ilex) proteome as defined by shotgun MS (nLC-MS/MS, Orbitrap) approach

Project description:Holm oak (Quercus ilex) is the most important and representative specie of the Mediterranean forest and of the Spanish agrosilvo-pastoral ecosystem “Dehesa”. Despite its environmental and economic interest, Holm oak is still an orphan species whose biology is very little known, especially at the molecular level. In this research, we have performed a shotgun proteomic approach (nLC-MSMS, Orbitrap) to analyze the Holm oak proteome, using, as starting material, a pool generated by mixing equal amounts of homogenized tissue, including embryo, cotyledons (from mature acorns), and leaves and roots (from 6-month old plantlets grown in a greenhouse under environmental conditions). The proteome generated will be the bases of further studies on population variability, growth, development and responses to stresses in this species.

2018-01-16 | PXD008001 | Pride

The impact of drought on phellem development: morpho-physiological adaptations and gene expression dynamics in cork oak stems

Project description:This work aimed to characterize the molecular adaptations occurring in cork oak (Quercus suber) stems in adaptation to drought, and identify key genetic pathways regulating phellem development. One-year-old cork oak plants were grown for additional 6 months under well-watered (WW) or water-deficit (WD) conditions and main stems were targeted for transcriptomic analysis. WD had a negative impact on secondary growth, decreasing the activity of the vascular cambium and phellogen. Following a tissue-specific approach, we analyzed the transcriptional changes imposed by WD in phellem (outer bark), inner bark, and xylem, and found a global downregulation of genes related to cell division, cell wall biogenesis, lignin and/or suberin biosynthesis. Phellem and phloem showed a concerted upregulation of photosynthesis-related genes, suggesting a determinant role of stem photosynthesis in the adaptation of young plants to long-term drought. The data gathered will be important to further harness the diverse genetic background of this species for the development of optimized management practices.

2024-04-29 | E-MTAB-13376 | biostudies-arrayexpress

RNA-seq, miRNA-seq, and degradome-seq analysis of taproots and lateral roots of Quercus robur seedlings under well-watered and drought stress conditions [degradome]

Project description:Identification of genes involved in the regulation of taproot and lateral root growth in Quercus robur seedlings under drought stress and well-watered conditions. Genes involved in the regulation of taproot and lateral root growth in Quercus robur seedlings were identified using RNA-seq, miRNA-seq, and degradome-seq. The analysis focused on the gene expression, miRNA regulation, and mRNA degradation profiles of taproots and lateral roots under both drought stress and well-watered conditions. Key genes and their regulatory miRNAs were identified, along with the role of mRNA degradation pathways in response to stress, providing insights into the molecular mechanisms controlling root growth and development in oak seedlings under varying water availability.

2025-04-22 | GSE295322 | GEO

RNA-seq, miRNA-seq, and degradome-seq analysis of taproots and lateral roots of Quercus robur seedlings under well-watered and drought stress conditions [miRNA-seq]

2025-04-22 | GSE295320 | GEO

RNA-seq, miRNA-seq, and degradome-seq analysis of taproots and lateral roots of Quercus robur seedlings under well-watered and drought stress conditions [RNA-seq]

2025-04-22 | GSE295319 | GEO