Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Metagenomic samples from along a rainfall gradient

ABSTRACT: Metagenomic samples from along a rainfall gradient

PROVIDER: PRJNA930013 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR24008500_1.fastq.gz	Fastqsanger.gz
	SRR24008500_2.fastq.gz	Fastqsanger.gz
	SRR24008501_1.fastq.gz	Fastqsanger.gz
	SRR24008501_2.fastq.gz	Fastqsanger.gz
	SRR24008502_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 186

Similar Datasets

Metagenomic analysis of sediments along a uranium gradient

Project description:Metagenomic analysis of sediments along a uranium gradient

| PRJEB6942 | ENA

Metagenomic analysis of sediments along a uranium gradient metagenomic assembly

Project description:EMG produced TPA metagenomics assembly of the Metagenomic analysis of sediments along a uranium gradient (Metagenomic analysis of sediments along a uranium gradient) data set

| PRJEB22502 | ENA

Soil samples along an elevation gradient in central Japan

Project description:Soil samples along an elevation gradient in central Japan Raw sequence reads

| PRJNA833777 | ENA

bacterial diversity along elevation gradient

Project description:bacterial diversity along elevation gradient Metagenome

| PRJNA906103 | ENA

Developmental profiling study along the maize leaf gradient

Project description:Developmental profiling study along the maize leaf gradient

| PRJEB48470 | ENA

The microbial functional structure along the latitudinal gradient from the north to the south in China mainland as characterized by GeoChip

Project description:Understanding and quantifying the effects of environmental factors influencing the variation of abundance and diversity of microbial communities was a key theme of ecology. For microbial communities, there were two factors proposed in explaining the variation in current theory, which were contemporary environmental heterogeneity and historical events. Here, we report a study to profile soil microbial structure, which infers functional roles of microbial communities, along the latitudinal gradient from the north to the south in China mainland, aiming to explore potential microbial responses to external condition, especially for global climate changes via a strategy of space-for-time substitution. Using a microarray-based metagenomics tool named GeoChip 5.0, we showed that microbial communities were distinct for most but not all of the sites. Using substantial statistical analyses, exploring the dominant factor in influencing the soil microbial communities along the latitudinal gradient. Substantial variations were apparent in nutrient cycling genes, but they were in line with the functional roles of these genes. 300 samples were collected from 30 sites along the latitudinal gradient, with 10 replicates in every site

2015-05-23 | E-GEOD-69171 | biostudies-arrayexpress

Carbon starvation along the maize leaf gradient

Project description:gene expression profiling in different zones along the gradient of the growing maize leaf balde aover a time course of dirunal cycle and carbon starvation by extension of the night Plants assimilate carbon in their photosynthetic tissues in the light. However, carbon is required during the night, and in non-photosynthetic organs. It is therefore essential that plants manage their carbon resources spatially and temporally and coordinate growth with carbon availability. In growing maize (Zea mays) leaf blades a defined developmental gradient facilitates analyses in the cell division, elongation and mature zones. We investigated the responses of the metabolome and transcriptome and polysome loading, as a qualitative proxy for protein synthesis, at dusk, dawn and 6, 14 and 24 hours into an extended night, and tracked whole leaf elongation over this time course. Starch and sugars are depleted by dawn in the mature zone, but only after an extension of the night in the elongation and division zones. Sucrose recovers partially between 14 and 24 h into the extended night in the growth zones but not the mature zone. The global metabolome and transcriptome track these zone-specific changes in sucrose. Leaf elongation and polysome loading in the growth zones also remain high at dawn, decrease between 6 and 14 h into the extended night and then partially recover indicating that growth processes are determined by local carbon status. The level of sucrose-signaling metabolite trehalose-6-phosphate, and the trehalose-6-phosphate:sucrose ratio are much higher in growth than mature zones at dusk and dawn but fall in the extended night. Candidate genes were identified by searching for transcripts that show characteristic temporal response patterns or contrasting responses to carbon starvation in growth and mature zones. 3 repliucates per time point and leaf region, each pooled form 5 indiviual plants

2016-08-24 | E-GEOD-85963 | biostudies-arrayexpress

Carbon starvation along the maize leaf gradient

2016-08-24 | GSE85963 | GEO

Metagenomic samples from composting

Project description:Metagenomic samples from composting

| PRJNA1083291 | ENA

Healthy danish metagenomic samples

Project description:Healthy danish metagenomic samples

| PRJEB41786 | ENA