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Production of rAAV by plasmid transfection induces antiviral and inflammatory responses in suspension HEK293

ABSTRACT: Production of rAAV by plasmid transfection induces antiviral and inflammatory responses in suspension HEK293

PROVIDER: PRJNA930839 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR23322800_1.fastq.gz	Fastqsanger.gz
	SRR23322800_2.fastq.gz	Fastqsanger.gz
	SRR23322801_1.fastq.gz	Fastqsanger.gz
	SRR23322801_2.fastq.gz	Fastqsanger.gz
	SRR23322802_1.fastq.gz	Fastqsanger.gz

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Project description:BackgroundDicer is a 219-kDa protein that plays key roles in gene regulation, particularly as the ribonuclease III enzyme responsible for cleaving precursor miRNA substrates. Its enzymatic activity is highly regulated by protein factors, and this regulation can impact on the levels of miRNAs and modulate the behavior of a cell. To better understand the underlying mechanisms of regulation, detailed enzymatic and structural characterization of Dicer are needed. However, these types of studies generally require several milligrams of recombinant protein, and efficient preparation of such quantities of pure human Dicer remains a challenge. To prepare large quantities of human Dicer, we have optimized transfection in HEK293-6E cells grown in suspension and streamlined a purification procedure.ResultsTransfection conditions were first optimized to achieve expression levels between 10 and 18?mg of recombinant Dicer per liter of culture. A three-step purification protocol was then developed that yields 4-9?mg of purified Dicer per liter of culture in a single day. From SEC-MALS/RI analysis and negative stain TEM, we confirmed that the purified protein is monomerically pure ( ? 98%) and folds with the characteristic L-shape geometry. Using an electrophoretic mobility shift assay, a dissociation constant (Kd) of 5?nM was measured for Dicer binding to pre-let-7a-1, in agreement with previous reports. However, when probing the cleavage activity of Dicer for pre-let-7a-1, we measured kcat (7.2?±?0.5?min-?1) and KM (1.2?±?0.3??M) values that are much higher than previously reported due to experimental conditions that better respect the steady-state assumption.ConclusionsThe expression and purification protocols described here provide high yields of monomerically pure and active human Dicer. Cleavage studies of a pre-let-7 substrate with this purified Dicer reveal higher kcat and KM values than previously reported and support the current view that conformational changes are associated with substrate binding. Large quantities of highly pure Dicer will be valuable for future biochemical, biophysical and structural investigations of this key protein of the miRNA pathway.

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Production of rAAV by plasmid transfection induces antiviral and inflammatory responses in suspension HEK293

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