Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Soil metagenome

ABSTRACT: Water level experiment: fungal communities (2022)

PROVIDER: PRJNA931926 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR23355111_1.fastq.gz	Fastqsanger.gz
	SRR23355111_2.fastq.gz	Fastqsanger.gz
	SRR23355112_1.fastq.gz	Fastqsanger.gz
	SRR23355112_2.fastq.gz	Fastqsanger.gz
	SRR23355113_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 78

Similar Datasets

soil metagenome

Project description:Water level experiment: Fungal communities Raw sequence reads (2022)

| PRJNA931781 | ENA

soil metagenome

Project description:Water level experiment : Archaea communities (2022)

| PRJNA932481 | ENA

soil metagenome

Project description:Water level experiment: soil metagenome raw sequence reads (2022)

| PRJNA930665 | ENA

A comprehensive study to understand the effects of soil type, soil transplant and landuse changes on soil microbial community and its feedback responses

Project description:The experiment at three long-term agricultural experimental stations (namely the N, M and S sites) across northeast to southeast China was setup and operated by the Institute of Soil Science, Chinese Academy of Sciences. This experiment belongs to an integrated project (The Soil Reciprocal Transplant Experiment, SRTE) which serves as a platform for a number of studies evaluating climate and cropping effects on soil microbial diversity and its agro-ecosystem functioning. Soil transplant serves as a proxy to simulate climate change in realistic climate regimes. Here, we assessed the effects of soil type, soil transplant and landuse changes on soil microbial communities, which are key drivers in Earth’s biogeochemical cycles.

2016-02-04 | GSE77546 | GEO

2014 Panama soil proteomics - Community proteogenomics reveals the systemic impact of phosphorus availability on microbial functions in tropical soil

Project description:integrating metagenomics and metaproteomics to study microbial communities that have undergone long-term P addition experiment

2018-01-08 | PXD005910 | Pride

soil mcirobial functional communities

Project description:To study the soil mcirobial functional communities and the nutrient cycles couplings changes after exposure to different contaminant

2020-12-31 | GSE135153 | GEO

The influence of long-term copper contaminated agricultural soil at different pH levels on microbial communities and springtail transcriptional regulation

Project description:Copper has long been applied for agricultural practices. Like other metals, copper is highly persistent in the environment and biologically active long after its use has ceased. Here we present a unique study on the long-term effects (27 years) of copper and pH on soil microbial communities and on Folsomia candida, an important representative of the soil macrofauna, in an experiment with a full factorial, random block design. Bacterial communities were mostly affected by pH. These effects were prominent in Acidobacteria, while Actinobacteria and Gammaroteobacteria communities were affected by original and bioavailable copper. Reproduction and survival of the collembolan F. candida was not affected by the studied copper concentrations. However, the transcriptomic responses to copper reflected a mechanism of copper transport and detoxification, while pH exerted effects on nucleotide and protein metabolism and (acute) inflammatory response. We conclude that microbial community structure explained the history of copper contamination, while gene expression analysis of F. candida is associated with the current level of bioavailable copper. Combined analysis at various trophic levels is highly relevant in the context of assessing long-term soil pollution.

2012-04-04 | GSE29644 | GEO

soil metagenome

Project description:the water-level-fluctuating zone soil Metagenome

| PRJNA293627 | ENA

Microbial community structure and functions are resilient to metal pollution along two forest soil gradients

Project description:Despite the global importance of forests, it is virtually unknown how their soil microbial communities adapt at the phylogenetic and functional level to long term metal pollution. Studying twelve sites located along two distinct gradients of metal pollution in Southern Poland revealed that both community composition (via MiSeq Illumina sequencing of 16S rRNA genes) and functional gene potential (using GeoChip 4.2) were highly similar across the gradients despite drastically diverging metal contamination levels. Metal pollution level significantly impacted microbial community structure (p = 0.037), but not bacterial taxon richness. Metal pollution altered the relative abundance of specific bacterial taxa, including Acidobacteria, Actinobacteria, Bacteroidetes, Chloroflexi, Firmicutes, Planctomycetes and Proteobacteria. Also, a group of metal resistance genes showed significant correlations with metal concentrations in soil, although no clear impact of metal pollution levels on overall functional diversity and structure of microbial communities was observed. While screens of phylogenetic marker genes, such as 16S rRNA, provided only limited insight into resilience mechanisms, analysis of specific functional genes, e.g. involved in metal resistance, appeared to be a more promising strategy. This study showed that the effect of metal pollution on soil microbial communities was not straightforward, but could be filtered out from natural variation and habitat factors by multivariate statistical analysis and spatial sampling involving separate pollution gradients.

2014-07-22 | GSE59620 | GEO

soil metagenome

Project description:Water level experiment_Bacterial community of Raw sequence reads

| PRJNA930205 | ENA