Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Comparative transcriptomic analysis of males and females in the dioecious weeds Amaranthus palmeri and Amaranthus tuberculatus

PROVIDER: PRJNA934958 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR23474306_1.fastq.gz	Fastqsanger.gz
	SRR23474306_2.fastq.gz	Fastqsanger.gz
	SRR23474307_1.fastq.gz	Fastqsanger.gz
	SRR23474307_2.fastq.gz	Fastqsanger.gz
	SRR23474308_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 94

Similar Datasets

Mesotrione metabolism in Amaranthus palmeri and Amaranthus tuberculatus (LCMS negative mode)

Project description:Metabolism of the 4-hydroxyphenylpyruvate dioxygenase-inhibiting herbicide mesotrione in Amaranthus palmeri and Amaranthus tuberculatus populations (LCMS negative mode)

2023-06-27 | MSV000092291 | MassIVE

Amaranthus tuberculatus

Project description:Amaranthus tuberculatus

| PRJNA38549 | ENA

Amaranthus palmeri sex chromosome evolution

Project description:Male linked genomic regions determine sex in dioecious Amaranthus palmeri

| PRJEB38372 | ENA

GNPS - Mesotrione metabolism in Amaranthus palmeri and Amaranthus tuberculatus (LCMS negative mode)

Project description:Metabolism of the 4-hydroxyphenylpyruvate dioxygenase-inhibiting herbicide mesotrione in Amaranthus palmeri and Amaranthus tuberculatus populations (LCMS negative mode)

2023-06-27 | MSV000092291 | GNPS

Transcriptional profiling in dioecious plant Populus cathayana reveals potential and sex-specific molecular adaptations to solar UV-B radiation.

2014-01-18 | GSE54182 | GEO

Amaranthus tuberculatus

Project description:Amaranthus tuberculatus Transcriptome

| PRJNA432348 | ENA

Project description:Amaranthus tuberculatus (IWGC)

| PRJNA1089550 | ENA

Amaranthus palmeri

Project description:Amaranthus palmeri overview

| PRJNA428111 | ENA

Project description:Amaranthus palmeri RNAseq

| PRJNA626536 | ENA

Transcriptional profiling in dioecious plant Populus cathayana reveals potential and sex-specific molecular adaptations to solar UV-B radiation.

Project description:Recently, we found a dioecious plant Populus cathayana males possess a greater tolerance to enhanced UV-B radiation than do females. To carry this work forward, comparative transcriptome analyses were carried out. Similar to previous studies, a set of conserved functions and pathways related to UV-B stress were detected in males and females, regardless of the sex. In addition, sex-specific responses via transcriptome remodeling were also detected as shown in the changes of sex-related gene expression occurred in some pathways. For example, a lot of differentially expressed genes (DEGs) involved in amino acid metabolism were mainly up-regulated in males, but down-regulated in females. Moreover, we found some DEGs expressed predominantly or exclusively in one sex, which may directly contribute to sex-related physiological responses. 4 samples examined: (i) males exposure to decreased solar UV-B radiation (MC); (ii) females exposure to decreased solar UV-B radiation (FC); (iii) males exposure to ambient solar UV-B radiation (MU); and (iv) females exposure to ambient solar UV-B radiation (FU). Nine plants of each sex were exposed to each treatment, and RNA samples from the 9 individuals were pooled with equal proportion.

2014-01-18 | E-GEOD-54182 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data