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ATAC-seq in wild-type and XAF1 knockout HT29 cells after vesicular stomatitis virus infection

ABSTRACT: ATAC-seq in wild-type and XAF1 knockout HT29 cells after vesicular stomatitis virus infection

PROVIDER: PRJNA936573 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR23524780_1.fastq.gz	Fastqsanger.gz
	SRR23524780_2.fastq.gz	Fastqsanger.gz
	SRR23524781_1.fastq.gz	Fastqsanger.gz
	SRR23524781_2.fastq.gz	Fastqsanger.gz
	SRR23524782_1.fastq.gz	Fastqsanger.gz

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XAF1 knockout HT29 cells after vesicular stomatitis virus infection

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ATAC-seq in wild-type and XAF1 knockout HT29 cells after vesicular stomatitis virus infection

Project description:To investigate the function of XAF1 in chromatin openning. Wild-type or XAF1 knockout HT29 cells were infected with VSV for 0 or 3 hours,ATAC-seq was performed. Examination of chromatin openness in Wild-type or XAF1 knockout HT29 cells.

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mRNA-seq of wild-type or XAF1 knockout HT29 cells after vesicular stomatitis virus infection

Project description:To investigate the function of XAF1 in immune response, we established XAF1 knockout cell lines in which XAF1 gene has been knockout by sgRNA. We then performed gene expression profiling analysis using data obtained from RNA-seq of WT or XAF1 knockout HT29 cells with or without VSV infection

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H3K27Ac ChIP-seq in wild-type and XAF1 knockout HT29 cells after vesicular stomatitis virus infection

Project description:To investigate the function of XAF1 in chromatin openning. Wild-type or XAF1 knockout HT29 cells were infected with VSV for 0 or 3 hours, ChIP-seq was did with H3K27Ac antibody. Chromatin immunoprecipitation DNA-sequencing (ChIP-seq) for histone modifications H3K27Ac in HT29 cells.

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Project description:mRNA-seq of wild-type or XAF1 knockout HT29 cells after vesicular stomatitis virus infection

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H3K27Ac ChIP-seq in wild-type and XAF1 knockout HT29 cells after vesicular stomatitis virus infection

Project description:H3K27Ac ChIP-seq in wild-type and XAF1 knockout HT29 cells after vesicular stomatitis virus infection

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XAF1 knockout HT29 cells after vesicular stomatitis virus infection

Project description:This SuperSeries is composed of the SubSeries listed below.

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Vesicular stomatitis virus

Project description:Vesicular stomatitis virus (VSV): Genome sequencing and assembly

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Understanding the molecular basis leading the virulence of vesicular stomatitis virus in pigs

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Project description:To investigate whether and what miRNAs expression might be regulated by VSV (vesicular stomatitis virus?) challenge, we analyzed the miRNA expression profile of mouse primary peritoneal macrophages infected with VSV by using an array-based miRNA profiling. After the infection of VSV at MOI 10 for 48 h, the array revealed that many miRNAs were up-regulated in macrophages?

2009-05-11 | E-MEXP-2110 | biostudies-arrayexpress

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