Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Genotyping-by-sequencing of gray fox and other canid lineages

PROVIDER: PRJNA938958 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR23624000.fastq.gz	Fastqsanger.gz
	SRR23624100.fastq.gz	Fastqsanger.gz
	SRR23624200.fastq.gz	Fastqsanger.gz
	SRR23624001.fastq.gz	Fastqsanger.gz
	SRR23624101.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 340

Similar Datasets

Urocyon cinereoargenteus

Project description:Whole genome sequencing of gray fox

| PRJNA966176 | ENA

Project description:Investigation of canid TRNP1 genetic variants – Fox

| PRJEB55814 | ENA

Gray and Island Fox

Project description:Gray fox (Urocyon cinereoargenteus) and island fox (Urocyon littoralis) Raw sequence reads

| PRJNA478450 | ENA

Proteomic Genotyping: Using Mass Spectrometry to Infer SNP Genotypes in Pigmented and Non-Pigmented Hair

Project description:Proteomic genotyping is the use of genetically variant peptides (GVPs), detected in a forensic protein sample, to infer the genotype of corresponding non-synonymous SNP alleles in the donor’s genome. This process does not depend on the presence of accessible or useable DNA in a sample. This makes proteomic genotyping an attractive alternative for analysis of problematic forensic samples, such as hair shafts, degraded bones or teeth, fingermarks, or sexual assault evidence. To demonstrate the concept in hair shafts, we developed an optimized sample processing protocol that could be used with high effectiveness on single hairs. This allows us to determine if the detected profiles of genetically variant peptides are robust and result in a consistent profile of inferred SNP alleles regardless of the chemical or biological history of the sample. Several real world scenarios have been evaluated. Here we include a study of four European subjects that had both pigmented and non-pigmented (or gray and non-gray) hair shafts. We tested whether (a) protein profiles change as a result of the loss of pigmentation and (b) these changes were reflected in the inferred genotype derived from detection of genetically variant peptides. Using this information, we can determine whether the resulting GVP profiles are more dependent on the biological context of pigmentation status or the underlying genotype.

2020-05-27 | PXD016156 | Pride

Urocyon

Project description:Gray and island fox (Urocyon) whole genome raw sequence reads

| PRJNA312115 | ENA

Project description:Whole genome sequence analysis of basal gray wolf lineages

| PRJNA736617 | ENA

Project description:Genotyping of Mycobacterium tuberculosis lineages circulating in Algeria

| PRJEB34813 | ENA

Project description:Genotyping of Mycobacterium tuberculosis lineages circulating in Algeria

| PRJEB34818 | ENA

Project description:Genotyping of Mycobacterium tuberculosis lineages circulating in Algeria

| PRJEB34812 | ENA

Project description:Genotyping of Mycobacterium tuberculosis lineages circulating in Algeria

| PRJEB34814 | ENA

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data