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ABSTRACT: the microbes of tilapia pond

PROVIDER: PRJNA943132 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR23848400_1.fastq.gz	Fastqsanger.gz
	SRR23848400_2.fastq.gz	Fastqsanger.gz
	SRR23848401_1.fastq.gz	Fastqsanger.gz
	SRR23848401_2.fastq.gz	Fastqsanger.gz
	SRR23848402_1.fastq.gz	Fastqsanger.gz

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Transcriptome comparison reveals a genetic network regulating the lower temperature limit in fish

Project description:Transcriptional plasticity is a major driver of phenotypic differences between species. The lower temperature limit (LTL), namely the lower end of survival temperature, is an important trait delimiting the geographical distribution of a species, however, the genetic mechanisms are poorly understood. We investigated the inter-species transcriptional diversification in cold responses between zebrafish Danio rerio and tilapia Oreochromis niloticus, which were reared at a common temperature (28Â°C) but have distinct LTLs. We identified significant expressional divergence between the two species in the orthologous genes from gills when the temperature cooled to the LTL of tilapia (8Â°C). Five KEGG pathways were found sequentially over-represented in the zebrafish/tilapia divergently expressed genes in the duration (12 hour) of 8Â°C exposure, forming a signaling cascade from metabolic regulation to apoptosis via FoxO signaling. Consistently, we found differential progression of apoptosis in the gills of the two species in which zebrafish manifested a delayed and milder apoptotic phenotype than tilapia, corresponding with a lower LTL of zebrafish. We identified diverged expression in 25 apoptosis-related transcription factors between the two species which forms an interacting network with diverged factors involving the FoxO signaling and metabolic regulation. We propose a genetic network which regulates LTL in fishes.Â Examination of gene expressional divergence in gill between zebrafish and tilapia

2016-07-03 | E-GEOD-69965 | biostudies-arrayexpress

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