Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Arthrobacter vasquezii strain:EH-1B-1

ABSTRACT: Arthrobacter vasquezii strain:EH-1B-1 Genome sequencing and assembly

PROVIDER: PRJNA947176 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Similar Datasets

Lysobacter soli strain:EH

Project description:Lysobacter soli strain:EH Genome sequencing and assembly

| PRJNA949585 | ENA

Rickettsia rhipicephali strain:EH

Project description:Rickettsia rhipicephali strain:EH Genome sequencing and assembly

| PRJNA882798 | ENA

Plasmodiophora brassicae strain:eH

Project description:Plasmodiophora brassicae strain:eH Genome sequencing and assembly

| PRJNA422793 | ENA

Pantoea agglomerans strain:Eh 335

Project description:Pantoea agglomerans strain:Eh 335 Genome sequencing and assembly

| PRJNA690645 | ENA

Tenacibaculum sp. 1B UA strain:1B UA

Project description:Tenacibaculum sp. 1B UA strain:1B UA Genome sequencing and assembly

| PRJNA810982 | ENA

Transcriptome analysis of Arthrobacter in the phyllosphere

2013-06-21 | GSE48198 | GEO

Transcriptome analysis of Arthrobacter in the phyllosphere

Project description:Arthrobacter chlorophenolicus A6 is a 4-chlorophenol degrading soil bacterium with high phyllosphere colonization capacity. Till now the genetic basis for the phyllosphere competency of Arthrobacter or other pollutant-degrading bacteria is uncertain. We investigated global gene expression profile of A. chlorophenolicus grown in the phyllosphere of common bean (Phaseolus vulgaris) compared to growth on agar surfaces. We designed transcriptome arrays and investigated which genes had different transcript levels in the phyllosphere of common bean (Phaseolus vulgaris) as compared to agar surfaces. Since water availability is considered an important factor in phyllosphere survival and activity, we included both high and low relative humidity treatments for the phyllosphere-grown cells. In addition, we determined the expression profile under pollutant exposure by the inclusion of two agar surface treatments, i.e. with and without 4-chlorophenol.

2013-06-21 | E-GEOD-48198 | biostudies-arrayexpress

Raoultella ornithinolytica strain:B1645-1B | isolate:B1645-1B

Project description:Raoultella ornithinolytica strain:B1645-1B | isolate:B1645-1B Genome sequencing

| PRJNA1000043 | ENA

Proteomic analysis of the papaverine degrading Arthrobacter sp.

Project description:In previous work in our group, shotgun genome sequencing of Arthrobacter sp. revealed potential new P450 monooxygenases and many other oxidoreductases with putative hydroxylation activity. A targeted approach to identify enzymes involved in the degradation of certain molecules is proteomic analysis. In the case of growth on certain substances, enzymes like P450s, which are responsible for the observed organism’s capabilities, might be overexpressed or initially induced.

2019-02-19 | PXD009566 | Pride

Transcriptomic analysis of Arthrobacter sp. CGMCC 3584 responding to dissolved oxygen for cAMP production

Project description:Arthrobacter sp. CGMCC 3584 are able to produce high yields of extracellular cyclic adenosine monophosphate (cAMP), which plays a vital role in the field of treatment of disease and animal food, during aerobic fermentation. DNA array-based transcriptional analysis of Arthrobacter cells was conducted to elucidate the higher productivity of cAMP under high oxygen supply. Results showed that 14.1% and 19.3% of the whole genome genes were up-regulated and down-regulated notably, respectively. The largest group with altered transcriptional levels belonged to the group involved in carbohydrate transport and metabolism. Other large functional groups of differentially expressed genes changed significantly included amino acid transport and metabolism, inorganic ion transport and metabolism and transcription.

2017-06-02 | GSE99546 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data