Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Transcriptome dynamics of mutualistic poxvirus infection of tropical fruit fly hosts

ABSTRACT: Transcriptome dynamics of mutualistic poxvirus infection of tropical fruit fly hosts

PROVIDER: PRJNA952189 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR24063500_1.fastq.gz	Fastqsanger.gz
	SRR24063500_2.fastq.gz	Fastqsanger.gz
	SRR24063501_1.fastq.gz	Fastqsanger.gz
	SRR24063501_2.fastq.gz	Fastqsanger.gz
	SRR24063502_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 162

Similar Datasets

Transcriptome dynamics of mutualistic poxvirus infection of tropical fruit fly hosts

Project description:Parasitoid wasps are one of the most species-rich groups of animals on Earth, due to their ability to successfully develop as parasites of nearly all types of insects. Unlike most known parasitoid wasps that specialize within one or a few host species, Diachasmimorpha longicaudata is a generalist that can survive within multiple genera of tephritid fruit fly hosts, including many globally important pest species. D. longicaudata has therefore been widely released to suppress pest populations as part of biological control efforts in tropical and subtropical agricultural systems. In this study, we investigated the role of a mutualistic poxvirus in shaping the host range of D. longicaudata across three genera of agricultural pest species: two of which are permissive hosts for D. longicaudata parasitism and one that is a nonpermissive host. We found that permissive hosts Ceratitis capitata and Bactrocera dorsalis were highly susceptible to virus infection, displaying rapid virus replication and abundant fly mortality. However, the nonpermissive host Zeugodacus cucurbitae largely overcame virus infection, exhibiting substantially lower mortality and no virus replication. Further investigation of transcriptional dynamics during virus infection demonstrated hindered viral gene expression and limited changes in fly gene expression within the nonpermissive host compared to the permissive species, indicating that the host range of the viral symbiont may dictate the host range of D. longicaudata wasps. These findings also reveal that viral symbiont activity may be a major contributor to the success of D. longicaudata as a generalist parasitoid species and a globally successful biological control agent.

2024-03-24 | GSE228918 | GEO

Transcriptomic analysis of a symbiotic poxvirus in parasitoid wasps and fly hosts

Project description:Parasitoid wasps of the species Diachasmimorpha longicaudata are associated with a heritable poxvirus, known as DlEPV, that is stored in the venom gland of adult female wasps and transferred to tephritid fly hosts of the wasps during oviposition. We conducted a RNA-seq differential expression analysis to gain insight on how DlEPV can replicate in both wasps and their fly hosts but only cause pathogenic effects during replication in flies. Our analysis revealed that 91.2% (176 of 193) of DlEPV genes showed significant differential expression during peak virus replication in wasp venom glands compared to parasitized flies. Over 80% of DlEPV replication genes were significantly upregulated in wasps, while 79% of DlEPV putative virulence genes were significantly upregulated in fly hosts. These data therefore support a dichotomy of viral function, where virus replication is promoted in wasp tissue and virulence in host tissue. Such a division of viral activity could represent an important adaptation to maintain a stable symbiosis between this virus and its associated parasitoid.

2020-11-03 | GSE122240 | GEO

Transcriptomic analysis of a symbiotic poxvirus in parasitoid wasps and fly hosts

Project description:Transcriptomic analysis of a symbiotic poxvirus in parasitoid wasps and fly hosts

| PRJNA504300 | ENA

MinION poxvirus seq

Project description:MinION poxvirus seq

| PRJEB8656 | ENA

Wadden Sea poxvirus

Project description:Wadden Sea poxvirus Genome sequencing and assembly

| PRJNA896524 | ENA

Anastrepha ludens breed:Mexican fruit fly

Project description:Anastrepha ludens breed:Mexican fruit fly Transcriptome or Gene expression

| PRJNA555704 | ENA

Fruit fly O-GlcNAc glycoproteomics

Project description:The reversible posttranslational O-GlcNAc modification of serine or threonine residues of intracellular proteins is involved in many cellular events from signaling cascades to epigenetic and transcriptional regulation. O-GlcNAcylation is a conserved nutrient-dependent process involving two enzymes, O-GlcNAc Transferase (OGT) adding O-GlcNAc while O-GlcNAcase (OGA) removing it in a manner that’s protein and context dependent. O-GlcNAcylation is essential for epigenetic regulation of gene expression through its action on Polycomb and Trithorax and Compass complexes. However, the important role of O-GlcNAc on adult life and healthspan have been largely unexplored, mainly due the lack of available model systems. Cataloging the O-GlcNAc proteome has proven useful in understanding the biology of this modification in vivo. In this study, we leveraged a recently developed oga knockout fly mutant to identify the O-GlcNAcylated proteins in adult Drosophila melanogaster. The adult O-GlcNAc proteome revealed many proteins related to cell and organismal growth, development, differentiation, and epigenetics. We identified many O-GlcNAcylated proteins that serve a role in increased growth and decreased longevity, including HCF, SIN3A, LOLA, KISMET, ATX2, SHOT, and FOXO.

2021-04-26 | PXD025344 | Pride

Salmon gill poxvirus genome survey

Project description:Salmon gill poxvirus virus genome survey

| PRJEB47286 | ENA

fruit fly

Project description:Phylogenomic analyses of the genus Drosophila reveals genomic signals of climate adaptation

| PRJNA736147 | ENA

RNA-seq analysis of different reproductive tissues in the olive fruit fly

Project description:we used an integrated approach for the elucidation of the reproductive system and mating procedures of the olive fruit fly, Bactrocera oleae. Initially, we performed RNAseq analysis in reproductive tissues of virgin and mated insects. Comparison of the transcriptomes resulted in the identification of genes that are differentially expressed after mating.

2021-02-18 | GSE166965 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data