Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

SYBH 16S rDNA/rRNA amplicons

ABSTRACT: SYBH 16S rDNA/rRNA amplicons Raw sequence reads

PROVIDER: PRJNA958612 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR24293700_1.fastq.gz	Fastqsanger.gz
	SRR24293700_2.fastq.gz	Fastqsanger.gz
	SRR24293701_1.fastq.gz	Fastqsanger.gz
	SRR24293701_2.fastq.gz	Fastqsanger.gz
	SRR24293702_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 230

Similar Datasets

Soil 16S rRNA amplicons

Project description:Soil 16S rRNA amplicons Raw sequence reads

| PRJNA523632 | ENA

16S rRNA and mcrA amplicons

Project description:16S rRNA and mcrA amplicons Raw sequence reads

| PRJNA821506 | ENA

A phylogenetic microarray targeting 16S rRNA genes from the bacterial division Acidobacteria

Project description:Investigation of the phylogenetic diversity of Acidobacteria taxa using PCR amplicons from positive control 16S rRNA templates and total genomic DNA extracted from soil and a soil clay fraction A ten chip study using PCR amplicons from cloned 16S rRNA genes and from diverse soil 16S rRNAs, with PCR primers specific to the Division Acidobacteria. Each chip measures the signal from 42,194 probes (in triplicate) targeting Acidobacteria division, subdivision, and subclades as well as other bacterial phyla. All samples except one (GSM464591) include 2.5 M betaine in the hybridization buffer. Pair files lost due to a computer crash.

2010-06-24 | E-GEOD-18711 | biostudies-arrayexpress

A phylogenetic microarray targeting 16S rRNA genes from the bacterial division Acidobacteria

2010-01-01 | GSE18711 | GEO

Quantification of mock microbial communities with metagenomes, 16S rRNA gene amplicons and metaproteomics

Project description:In this study we developed metaproteomics based methods for quantifying taxonomic composition of microbiomes (microbial communities). We also compared metaproteomics based quantification to other quantification methods, namely metagenomics and 16S rRNA gene amplicon sequencing. The metagenomic and 16S rRNA data can be found in the European Nucleotide Archive (Study number: PRJEB19901). For the method development and comparison of the methods we analyzed three types of mock communities with all three methods. The communities contain between 28 to 32 species and strains of bacteria, archaea, eukaryotes and bacteriophage. For each community type 4 biological replicate communities were generated. All four replicates were analyzed by 16S rRNA sequencing and metaproteomics. Three replicates of each community type were analyzed with metagenomics. The "C" type communities have same cell/phage particle number for all community members (C1 to C4). The "P" type communities have the same protein content for all community members (P1 to P4). The "U" (UNEVEN) type communities cover a large range of protein amounts and cell numbers (U1 to U4). We also generated proteomic data for four pure cultures to test the specificity of the protein inference method. This data is also included in this submission.

2017-05-12 | PXD006118 | Pride

16S rRNA amplicons from fish farm for lump fish

Project description:16S rRNA amplicons from fish farm for lump fish Raw sequence reads

| PRJNA476040 | ENA

16S rDNA sequencing

Project description:16S rDNA sequencing Raw sequence reads

| PRJNA882208 | ENA

Surface water 16S rRNA gene amplicons Raw sequence reads

Project description:Surface water 16S rRNA gene amplicons

| PRJNA507089 | ENA

Vitis Phyllosphere 16S Amplicons

Project description:Vitis Phyllosphere 16S Amplicons Raw sequence reads