Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

ABSTRACT: Microbiome and stomach content Tanganyika clupeids

PROVIDER: PRJNA961360 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR24296900_1.fastq.gz	Fastqsanger.gz
	SRR24296900_2.fastq.gz	Fastqsanger.gz
	SRR24296901_1.fastq.gz	Fastqsanger.gz
	SRR24296901_2.fastq.gz	Fastqsanger.gz
	SRR24296902_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 488

Similar Datasets

Project description:Human stomach microbiome

| PRJNA893028 | ENA

stomach metagenome

Project description:Rhesus stomach microbiome

| PRJNA186651 | ENA

Stomach samples of blue catfish

Project description:Stomach content of blue catfish (Ictalurus furcatus)

| PRJNA509916 | ENA

Community composition of plant biomass-associated bacteria in sheep rumen

Project description:Microbiome DNA from the adhering fraction of a sheep rumen. The RSTs were generated using an improved version of SARST (referred to as iSARST) from the microbiome DNA extracted from the adhering fraction of the rumen content taken from a sheep. The iSARST method is going to be submitted to Nature Biotechnology for publication. Keywords: other

2004-10-15 | E-GEOD-1842 | biostudies-arrayexpress

Iceman stomach content - The 5300-year-old Helicobacter pylori genome of the Iceman

Project description:Shotgun LC-MS/MS analysis of three stomach content samples of the Iceman, a 5300-year-old European glacier mummy.

2018-07-20 | PXD009565 | Pride

Community composition of plant biomass-associated bacteria in sheep rumen

2004-10-15 | GSE1842 | GEO

GNPS_Mice_GIMap_Stomach_Positive

Project description:data dependent MS2 acquisition of Stomach and Stomach Content of mice for Chagas Diseases. Two categories of condition: Infected vs Uninfected. Both has 12 days and 89 days sample collection point.

2018-07-14 | MSV000082618 | GNPS

Project description:23S stomach content metabarcoding of the black rabbitfish Siganus fuscescens

| PRJNA726752 | ENA

Lung microbiome enriched with anaerobes associated with Th17 immune phenotype

Project description:In a prior report, we observed two distinct lung microbiomes in healthy subjects that we termed â??pneumotypesâ??: pneumotypeSPT, characterized by high bacterial load and supraglottic predominant taxa (SPT) such as the anaerobes Prevotella and Veillonella; and pneumotypeBPT, with low bacterial burden and background predominant taxa (BPT) found in the saline lavage and bronchoscope. Here, we determined the prevalence of these two contrasting lung microbiome types, in a multi-center study of healthy subjects. We confirmed that a lower airway microbiome enriched with upper airway microbes (pneumotypeSPT) was present in ~45% of healthy individuals. Cross-sectional Multicenter cohort. BAL of 49 healthy subjects from three cohort had their lower airway microbiome assessed by 16S rDNA sequencing and microbial gene content (metagenome) was computationally inferred from taxonomic assignments. The amplicons from total 100 samples are barcoded; the barcode and other clinical characteristics (e.g. inflammatory biomarkers and metabolome data) for each sample are provided in the 'Pneumotype.sep.Map.A1.txt' file.

2016-03-29 | E-GEOD-74395 | biostudies-arrayexpress

Changes in intestinal permeability and gut microbiota following diet-induced weight loss in patients with metabolic dysfunction-associated steatohepatitis and liver fibrosis

Project description:We explore whether a low-energy diet intervention for Metabolic dysfunction-associated steatohepatitis (MASH) improves liver disease by means of modulating the gut microbiome. 16 individuals were given a low-energy diet (880 kcal, consisting of bars, soups, and shakes) for 12 weeks, followed by a stepped re-introduction to whole for an additional 12 weeks. Stool samples were obtained at 0, 12, and 24 weeks for microbiome analysis. Fecal microbiome were measured using 16S rRNA gene sequencing. Positive control (Zymo DNA standard D6305) and negative control (PBS extraction) were included in the sequencing. We found that low-energy diet improved MASH disease without lasting alterations to the gut microbiome.

2024-12-31 | E-MTAB-14061 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data