Project description:The oil contents and fatty acid composition of three non-edible seed oils extracted using Soxhlet extraction with hexane as the solvent were presented. The physical and chemical properties of the oils were determined from which cetane number, biofuel potential, higher heating values, and antimicrobial activities were assessed. The dominant fatty acids were 49 % linoleic acid, 37 % pentadecenoic acid, and 38 % cis-10-heptadecenenoic acid for Hura crepitans (HC), Thevetia nerifolia (TN) and Trichosanthes cucumerina (TC), respectively. The seed oils were majorly unsaturated, with HC having the highest degree of unsaturation. Acid value, saponification value, iodine value, and free fatty acids were low compared to many reported values in literature. The cetane values were generally high because the oils have a reasonable amount of saturated fatty acid, with TN having the highest cetane number. The low iodine value and saponification value make the biofuel potential and higher heating value to be high with TN having the highest in both and thus the best seed oil for biofuel. However, TN and HC have no antimicrobial activity to Klebsiella pneumoniae (gram -ve), Staphylococcus aureus (gram +ve), Escherichia coli (gram -ve), Bacillus subtilis, Enterobacter aerogenes, Candida albican, Rhizopus stolonifer, Fusarium Solani, Aspergillus flavus and Candida tropicalis, while TC has broad spectrum of activity against all tested bacteria and fungi, except Klebsiella pneumoniae.

| S-EPMC11417190 | biostudies-literature

A high-quality de novo genome assembly for clapper rail (Rallus crepitans).

Project description:The clapper rail (Rallus crepitans), of the family Rallidae, is a secretive marsh bird species that is adapted for high salinity habitats. They are very similar in appearance to the closely related king rail (R. elegans), but while king rails are limited primarily to freshwater marshes, clapper rails are highly adapted to tolerate salt marshes. Both species can be found in brackish marshes where they freely hybridize, but the distribution of their respective habitats precludes the formation of a continuous hybrid zone and secondary contact can occur repeatedly. This system, thus, provides unique opportunities to investigate the underlying mechanisms driving their differential salinity tolerance as well as the maintenance of the species boundary between the 2 species. To facilitate these studies, we assembled a de novo reference genome assembly for a female clapper rail. Chicago and HiC libraries were prepared as input for the Dovetail HiRise pipeline to scaffold the genome. The pipeline, however, did not recover the Z chromosome so a custom script was used to assemble the Z chromosome. We generated a near chromosome level assembly with a total length of 994.8 Mb comprising 13,226 scaffolds. The assembly had a scaffold N50 was 82.7 Mb, L50 of four, and had a BUSCO completeness score of 92%. This assembly is among the most contiguous genomes among the species in the family Rallidae. It will serve as an important tool in future studies on avian salinity tolerance, interspecific hybridization, and speciation.

| S-EPMC10484055 | biostudies-literature