Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Gene expression profiles at single cell level of CD45+ tumor-infiltrating immune cells in intra- and extra-cranial tumors

ABSTRACT: Gene expression profiles at single cell level of CD45+ tumor-infiltrating immune cells in intra- and extra-cranial tumors

PROVIDER: PRJNA967262 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR24442209.fastq.gz	Fastqsanger.gz
	SRR24442210.fastq.gz	Fastqsanger.gz
	SRR24442211.fastq.gz	Fastqsanger.gz
	SRR24442212.fastq.gz	Fastqsanger.gz
	SRR24442213.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 6

Similar Datasets

Gene expression profiles at single cell level of CD45+ tumor-infiltrating immune cells in intra- and extra-cranial tumors

Project description:Tumor cells and the anatomical location determine the composition and functionality of the non-malignant tumor microenvironment (TME). To determine the influence of the anatomical location, we have compared the transcriptome of CD45+ tumor-infiltrating immune cells isolated from intra- and extra-cranial tumors, respectively. The same tumor cell line was used to generate both tumor models.

2025-01-10 | GSE231657 | GEO

Expression data for tumor-infiltrating CD45+ cells

Project description:Expression data for tumor-infiltrating CD45+ cells

| PRJNA548914 | ENA

CD45+ vs CD45- RCC proteome characterization

Project description:Exploration of proteome differences between CD45+ and CD45- cell types in renal cell carcinoma tumors and normal adjacent tissue patient samples.

2020-10-14 | PXD014370 | Pride

scRNA seq analysis of CD45+ tumor infiltrating cells (TICs) of B16F10 tumor-bearing Trem1+/+ and Trem1-/- mice.

Project description:To gain a global understanding of the impact of TREM1 silencing, we analyzed the CD45+ tumor infiltrating cells (TICs) of B16F10 tumor-bearing Trem1+/+ and Trem1-/- mice. Utilizing the 10x Genomics Chromium Platform, we analyzed approximately 5390 cells per sample with a coverage rate of 15493 genes per cell.

2023-09-27 | E-MTAB-13237 | biostudies-arrayexpress

A Novel Method for Isolating Whole Protein from Human Cranial Bone

Project description:The presence of the extracellular matrix within human bone limits the applicability of conventional protocols for protein extraction. As a result, complete and accurate characterization of human bone proteome is yet to be performed, and as a result, several bone-related diseases such as craniosynostosis and osteosarcoma are still poorly understood. We sought to develop a reproducible method for extracting whole proteins of varying molecular weights from human cranial bone. Whole protein was extracted from human cranial suture by mechanically processing samples using a method that minimized heat introduction to proteins to limit degradation. Western blotting suggests the presence of whole protein while mass spectrometry was used to sequence peptides and identify isolated proteins. Molecular weights of extracted protein ranged from 9.4-629 kDa and contained proteins of both intra- and extra-cellular origin. High correlation scores among suture protein spectral counts suggest the reproducibility of the method. Ontology analytics revealed proteins of myriad functions including mediators of metabolic processes and cell organelles. These results suggest a reproducible method for isolation of whole protein representing a large range of molecular weights, origins and functions.

2016-10-05 | PXD003215 | Pride

single cell RNA sequencing of intra- and extra- articular ligaments in mice

Project description:single cell RNA sequencing of intra- and extra- articular ligaments in mice

| PRJNA800635 | ENA

A Novel Method for Isolating Whole Protein from Human Cranial Bone

2017-03-28 | MSV000080697 | MassIVE

Comparison miRNA expression between atherosclerotic and non-atherosclerotic ischemic stroke patients

Project description:The difference of circulating miRNA expressions by the presence of atherosclerosis in intra- and extra-cranial vessels were evaluated using serum of ischemic stroke patients.

2017-03-16 | GSE96621 | GEO

Intra- and extra-cellular environments contribute to the fate of HIV-1 infection

Project description:Intra- and extra-cellular environments contribute to the fate of HIV-1 infection

| PRJNA746330 | ENA

scRNA-seq analysis of tumor-infiltrating CD45+ cells from sitagliptin-treated mice

Project description:scRNA-seq analysis of tumor-infiltrating CD45+ cells from sitagliptin-treated mice

| PRJNA948366 | ENA